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Spg028998 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028998
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold5:17357298..17359996
RNA-Seq ExpressionSpg028998
SyntenySpg028998
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035434.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]3.0e-1347.75Show/hide
Query:  LRVVPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDL
        L  VPDS+CF ES LKEIA KTD IDA+ASRV G+PIQEL+ RV+ LE    +  ++E+ DSS+  V  MEER    L    + LL      LED +  +
Subjt:  LRVVPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDL

Query:  LVVRDSLEMVD
         VVR+ +  V+
Subjt:  LVVRDSLEMVD

KAA0041962.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1344.72Show/hide
Query:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV
        VPDS+ F ES+L+EIA KTD IDA+A RV+G+PIQ+L+ RV+ LE    +  S E GDSST SVA +EER    L    + LL    +  ED    L VV
Subjt:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV

Query:  RDSLEMVDWSYSAILELIGCSGR
        R+ +  V+   S  +  +   GR
Subjt:  RDSLEMVDWSYSAILELIGCSGR

KAA0053384.1 uncharacterized protein E6C27_scaffold428G00460 [Cucumis melo var. makuwa]4.7e-1447.06Show/hide
Query:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV
        VPDS+ F ES LKEIA KTD IDAVA RV+G+ IQEL+ RV+ LE    +  S E GDSST SVA +EER    L    + LL      LED +  L VV
Subjt:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV

Query:  RDSLEMVDWSYSAILELIG
        ++ +  V+   S  +  +G
Subjt:  RDSLEMVDWSYSAILELIG

KAA0066681.1 uncharacterized protein E6C27_scaffold271G00090 [Cucumis melo var. makuwa]3.0e-1349.07Show/hide
Query:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV
        VPDS+ F ES L+EIA KTD IDAVA RV+G+PIQEL+ RV+ LE    +  S E GDSST SVA +EER    L    + LL       ED +  L V+
Subjt:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV

Query:  RDSLEMVD
        R+ +  V+
Subjt:  RDSLEMVD

TYK31693.1 uncharacterized protein E5676_scaffold398G00590 [Cucumis melo var. makuwa]2.3e-1349.07Show/hide
Query:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV
        VPDS+ F ES+L+EIA KTD ID VASRV+G+PIQEL+ RV+ LE    +  S + GDSS DSVA +EER    L    + LL       ED +  L VV
Subjt:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV

Query:  RDSLEMVD
        R+ +  V+
Subjt:  RDSLEMVD

TrEMBL top hitse value%identityAlignment
A0A5A7SVW0 Senescence-specific cysteine protease sag391.5e-1347.75Show/hide
Query:  LRVVPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDL
        L  VPDS+CF ES LKEIA KTD IDA+ASRV G+PIQEL+ RV+ LE    +  ++E+ DSS+  V  MEER    L    + LL      LED +  +
Subjt:  LRVVPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDL

Query:  LVVRDSLEMVD
         VVR+ +  V+
Subjt:  LVVRDSLEMVD

A0A5A7TEV3 Reverse transcriptase8.6e-1444.72Show/hide
Query:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV
        VPDS+ F ES+L+EIA KTD IDA+A RV+G+PIQ+L+ RV+ LE    +  S E GDSST SVA +EER    L    + LL    +  ED    L VV
Subjt:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV

Query:  RDSLEMVDWSYSAILELIGCSGR
        R+ +  V+   S  +  +   GR
Subjt:  RDSLEMVDWSYSAILELIGCSGR

A0A5A7UDT4 Retrotrans_gag domain-containing protein2.3e-1447.06Show/hide
Query:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV
        VPDS+ F ES LKEIA KTD IDAVA RV+G+ IQEL+ RV+ LE    +  S E GDSST SVA +EER    L    + LL      LED +  L VV
Subjt:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV

Query:  RDSLEMVDWSYSAILELIG
        ++ +  V+   S  +  +G
Subjt:  RDSLEMVDWSYSAILELIG

A0A5D3DVV7 Retrotrans_gag domain-containing protein1.5e-1349.07Show/hide
Query:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV
        VPDS+ F ES L+EIA KTD IDAVA RV+G+PIQEL+ RV+ LE    +  S E GDSST SVA +EER    L    + LL       ED +  L V+
Subjt:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV

Query:  RDSLEMVD
        R+ +  V+
Subjt:  RDSLEMVD

A0A5D3E6I8 Uncharacterized protein1.1e-1349.07Show/hide
Query:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV
        VPDS+ F ES+L+EIA KTD ID VASRV+G+PIQEL+ RV+ LE    +  S + GDSS DSVA +EER    L    + LL       ED +  L VV
Subjt:  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVV

Query:  RDSLEMVD
        R+ +  V+
Subjt:  RDSLEMVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGTAGAGATCGAAGAGCAGATGCTCTATTGAGGGTAGTCCCTGATTCGGTATGCTTCTTTGAATCCTACCTTAAAGAGATTGCGACCAAGACAGACAAGATTGA
TGCGGTAGCTAGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTTGAGAACCTCGAGAGTAAATCTACGAAACCTAGTAGCTTCGAGCATGGGGACAGCT
CAACGGACTCTGTTGCCCAGATGGAGGAGCGGCACTGTTGGGGTTTATGTCCTAGAACTCAAGTTTTGTTATCCTTTGATCTGCATGGGCTTGAGGATAGCAAGGAAGAT
CTTTTGGTGGTTCGTGACTCATTGGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGATGCTCGGGACGTGAAAAGATGCAAAGAAATGAAAAAGAATC
AAAGAGAAAAAAGTCAACATTCGGTCAACATTTGACCAGCGTCGAGACGCCATCCCTTGAGCGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTCACAG
CGTCGAGACGCTGCGACCTTAGCGTCTCGACGCTACGTAATTTCCTTTCCAGAATACGCGTGTTTAGAGGCAGCGTCTCGACGCTACGACGAAAAATCAGTATTTATAGT
TCTTTTCGGCTAGGTTTTTGGGGATTGAATTTTGGGACCTTTGGGGAGCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGTAGAGATCGAAGAGCAGATGCTCTATTGAGGGTAGTCCCTGATTCGGTATGCTTCTTTGAATCCTACCTTAAAGAGATTGCGACCAAGACAGACAAGATTGA
TGCGGTAGCTAGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTTGAGAACCTCGAGAGTAAATCTACGAAACCTAGTAGCTTCGAGCATGGGGACAGCT
CAACGGACTCTGTTGCCCAGATGGAGGAGCGGCACTGTTGGGGTTTATGTCCTAGAACTCAAGTTTTGTTATCCTTTGATCTGCATGGGCTTGAGGATAGCAAGGAAGAT
CTTTTGGTGGTTCGTGACTCATTGGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGATGCTCGGGACGTGAAAAGATGCAAAGAAATGAAAAAGAATC
AAAGAGAAAAAAGTCAACATTCGGTCAACATTTGACCAGCGTCGAGACGCCATCCCTTGAGCGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTCACAG
CGTCGAGACGCTGCGACCTTAGCGTCTCGACGCTACGTAATTTCCTTTCCAGAATACGCGTGTTTAGAGGCAGCGTCTCGACGCTACGACGAAAAATCAGTATTTATAGT
TCTTTTCGGCTAGGTTTTTGGGGATTGAATTTTGGGACCTTTGGGGAGCCGTAA
Protein sequenceShow/hide protein sequence
MVGRDRRADALLRVVPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKED
LLVVRDSLEMVDWSYSAILELIGCSGREKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVTASRRCDLSVSTLRNFLSRIRVFRGSVSTLRRKISIYS
SFRLGFWGLNFGTFGEP