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Spg029018 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029018
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSigma factor binding protein 2
Genome locationscaffold5:15396644..15397057
RNA-Seq ExpressionSpg029018
SyntenySpg029018
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]4.1e-2352.52Show/hide
Query:  MDPSLIAGDVQETT--KKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDE
        MD +L+  ++  TT  KKK TRKRKS +   QPLKVVYISNPMRV TSA+EFRALVQELTGRDA+FPDP+KF   S   +  D  KK     D  ++D++
Subjt:  MDPSLIAGDVQETT--KKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDE

Query:  LLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA
         LL+D      S  DDF   S+ +LEDI  RD++E   A
Subjt:  LLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]4.9e-2452.86Show/hide
Query:  MDPSLIAGDVQETTKK--KATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKF-PSPSVHALETDPPKKPEEEDDDNDNDD
        MD SL+  ++  T KK  K TRKRKS +   QPLKVVYISNPMRV TSA+EFRALVQELTGRDA+FPDPTKF P+ S   +  D  +K     +  +++ 
Subjt:  MDPSLIAGDVQETTKK--KATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKF-PSPSVHALETDPPKKPEEEDDDNDNDD

Query:  ELLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA
        ELL+      + S  DDFL  SY +LEDI  RD++E   A
Subjt:  ELLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]7.1e-2353.03Show/hide
Query:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL
        MD +LI  +++    KK TRKRK S  KNQPLKVVYISNPMRV TSA+EFRALVQELTGRDA+FPDP KF   S+   E +  K  E +DD+  +     
Subjt:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL

Query:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMV
         LD+A   + S+DDFLE  Y + E++  R+M+
Subjt:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMV

XP_022941301.1 uncharacterized protein LOC111446639 [Cucurbita moschata]1.9e-2359.12Show/hide
Query:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL
        M+ SL+  DV+E  +K+  R RK  D KNQPLKVVYISNPMRVQ SAAEFR LVQELTG+DA      KFP PS  +     P+    +  D D+DDE L
Subjt:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL

Query:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA
        LL  AAMED SSD FL GSY + E IF RDMV+KLAA
Subjt:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]1.2e-2559.12Show/hide
Query:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL
        M+ SL+  DV+E  +K+  RKRK  D KNQPLKVVYISNPMRVQ SAAEFR LVQ+LTG+DA    P   PS SV   ET+  K    +DDD+D+D +LL
Subjt:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL

Query:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA
        L   AA+ + SSDDFL GSY +LE IF RDMV++LAA
Subjt:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein2.4e-2452.86Show/hide
Query:  MDPSLIAGDVQETTKK--KATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKF-PSPSVHALETDPPKKPEEEDDDNDNDD
        MD SL+  ++  T KK  K TRKRKS +   QPLKVVYISNPMRV TSA+EFRALVQELTGRDA+FPDPTKF P+ S   +  D  +K     +  +++ 
Subjt:  MDPSLIAGDVQETTKK--KATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKF-PSPSVHALETDPPKKPEEEDDDNDNDD

Query:  ELLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA
        ELL+      + S  DDFL  SY +LEDI  RD++E   A
Subjt:  ELLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA

A0A1S3B8H6 uncharacterized protein LOC1034871672.0e-2352.52Show/hide
Query:  MDPSLIAGDVQETT--KKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDE
        MD +L+  ++  TT  KKK TRKRKS +   QPLKVVYISNPMRV TSA+EFRALVQELTGRDA+FPDP+KF   S   +  D  KK     D  ++D++
Subjt:  MDPSLIAGDVQETT--KKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDE

Query:  LLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA
         LL+D      S  DDF   S+ +LEDI  RD++E   A
Subjt:  LLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA

A0A5D3DPQ4 Sigma factor binding protein 22.0e-2352.52Show/hide
Query:  MDPSLIAGDVQETT--KKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDE
        MD +L+  ++  TT  KKK TRKRKS +   QPLKVVYISNPMRV TSA+EFRALVQELTGRDA+FPDP+KF   S   +  D  KK     D  ++D++
Subjt:  MDPSLIAGDVQETT--KKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDE

Query:  LLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA
         LL+D      S  DDF   S+ +LEDI  RD++E   A
Subjt:  LLLLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like3.4e-2353.03Show/hide
Query:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL
        MD +LI  +++    KK TRKRK S  KNQPLKVVYISNPMRV TSA+EFRALVQELTGRDA+FPDP KF   S+   E +  K  E +DD+  +     
Subjt:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL

Query:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMV
         LD+A   + S+DDFLE  Y + E++  R+M+
Subjt:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMV

A0A6J1FKR4 uncharacterized protein LOC1114466399.0e-2459.12Show/hide
Query:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL
        M+ SL+  DV+E  +K+  R RK  D KNQPLKVVYISNPMRVQ SAAEFR LVQELTG+DA      KFP PS  +     P+    +  D D+DDE L
Subjt:  MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELL

Query:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA
        LL  AAMED SSD FL GSY + E IF RDMV+KLAA
Subjt:  LLDLAAMEDSSSDDFLEGSYGTLEDIFTRDMVEKLAA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic2.5e-0750.85Show/hide
Query:  RKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRD-ADF-PDPTKFPSPSVH
        ++++ S   ++P+KV YISNPMRV+T  ++FR LVQELTG+D AD  P PT F +  +H
Subjt:  RKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRD-ADF-PDPTKFPSPSVH

Q9LDH1 Sigma factor binding protein 1, chloroplastic4.6e-0950Show/hide
Query:  KKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPP
        +K+ +++K +   N+P+KV YISNPMRVQT A++FR LVQELTG+DA    P    SPS       PP
Subjt:  KKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPP

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.8e-0850.85Show/hide
Query:  RKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRD-ADF-PDPTKFPSPSVH
        ++++ S   ++P+KV YISNPMRV+T  ++FR LVQELTG+D AD  P PT F +  +H
Subjt:  RKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRD-ADF-PDPTKFPSPSVH

AT3G56710.1 sigma factor binding protein 13.3e-1050Show/hide
Query:  KKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPP
        +K+ +++K +   N+P+KV YISNPMRVQT A++FR LVQELTG+DA    P    SPS       PP
Subjt:  KKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAGTTTGATTGCTGGCGACGTGCAAGAGACGACGAAGAAGAAAGCAACGAGGAAAAGAAAATCCTCTGACCCGAAGAACCAACCCCTCAAAGTTGTCTACAT
ATCCAACCCCATGAGGGTTCAAACCAGCGCCGCTGAATTCCGAGCCTTGGTCCAAGAACTCACCGGCCGAGACGCCGATTTCCCAGACCCGACCAAGTTTCCATCGCCCT
CGGTCCATGCTCTGGAGACAGATCCTCCGAAGAAACCAGAAGAAGAAGACGACGACAACGACAACGACGACGAACTACTGTTACTTGATTTGGCTGCAATGGAGGATTCC
AGCAGCGATGATTTTCTTGAGGGTTCGTATGGGACTTTGGAGGATATTTTCACGAGGGATATGGTGGAGAAATTGGCCGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCAAGTTTGATTGCTGGCGACGTGCAAGAGACGACGAAGAAGAAAGCAACGAGGAAAAGAAAATCCTCTGACCCGAAGAACCAACCCCTCAAAGTTGTCTACAT
ATCCAACCCCATGAGGGTTCAAACCAGCGCCGCTGAATTCCGAGCCTTGGTCCAAGAACTCACCGGCCGAGACGCCGATTTCCCAGACCCGACCAAGTTTCCATCGCCCT
CGGTCCATGCTCTGGAGACAGATCCTCCGAAGAAACCAGAAGAAGAAGACGACGACAACGACAACGACGACGAACTACTGTTACTTGATTTGGCTGCAATGGAGGATTCC
AGCAGCGATGATTTTCTTGAGGGTTCGTATGGGACTTTGGAGGATATTTTCACGAGGGATATGGTGGAGAAATTGGCCGCCTGA
Protein sequenceShow/hide protein sequence
MDPSLIAGDVQETTKKKATRKRKSSDPKNQPLKVVYISNPMRVQTSAAEFRALVQELTGRDADFPDPTKFPSPSVHALETDPPKKPEEEDDDNDNDDELLLLDLAAMEDS
SSDDFLEGSYGTLEDIFTRDMVEKLAA