CuGenDBv2

Gene ID	Spg029033
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mediator of RNA polymerase II transcription subunit 21
Genome location	scaffold5:14210741..14214973
RNA-Seq Expression	Spg029033
Synteny	Spg029033
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0050832 - defense response to fungus (biological process) GO:0016592 - mediator complex (cellular component) GO:0043078 - polar nucleus (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR021384 - Mediator complex, subunit Med21 IPR037212 - Mediator complex, subunit Med7/Med21-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605829.1 Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyrosperma subsp. sororia]

4.2e-54

87.68

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALA+NTFGTLQRDAPPVRLSPNYPEPPPHEPTE +AN AEQPKLMSA+          L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNC+NLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

XP_022153730.1 mediator of RNA polymerase II transcription subunit 21 [Momordica charantia]

5.2e-52

86.96

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALA+NTFGTLQRDAPPVRLS NYPEPP  EPTE +ANIAEQPKLMSA+          L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

XP_022958635.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata]

2.5e-54

88.41

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALA+NTFGTLQRDAPPVRLSPNYPEPPPHEPTE +AN AEQPKLMSA+          L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

XP_023532119.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo]

1.6e-53

86.96

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALA+NTFGTLQRDAPPVRLSPNYPEPPPHEPT+ +AN  EQPKLMSA+          L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

XP_038893979.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]

1.2e-51

85.51

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALA+NTFGTLQRDAPPVRLSPNYPEPP HEPTE +ANIAEQPKLMSA          +L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQL+AAE+EL QVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZ00 Mediator of RNA polymerase II transcription subunit 21

1.6e-51

85.51

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALA+NTFGTLQRDAPPVRLSPNYPEPP  EPTE NA IAEQPKLMSA          +L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
         VGQELQKQL+AAEKEL QVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

A0A5A7TEZ9 Mediator of RNA polymerase II transcription subunit 21

1.8e-50

84.06

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALA+NTFGTLQRDAPPVRLSPNYPEPP  EPTE +A IAEQPKLMSA          +L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
         VGQELQKQL+AAE+EL QVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

A0A6J1DHM9 Mediator of RNA polymerase II transcription subunit 21

2.5e-52

86.96

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALA+NTFGTLQRDAPPVRLS NYPEPP  EPTE +ANIAEQPKLMSA+          L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

A0A6J1H2M0 Mediator of RNA polymerase II transcription subunit 21

1.2e-54

88.41

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALA+NTFGTLQRDAPPVRLSPNYPEPPPHEPTE +AN AEQPKLMSA+          L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

A0A6J1K432 Mediator of RNA polymerase II transcription subunit 21

1.2e-54

88.41

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALA+NTFGTLQRDAPPVRLSPNYPEPPPHEPTE +AN AEQPKLMSA+          L AALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSAS----------LEAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

SwissProt top hits

e value

%identity

Alignment

C0LU16 Mediator of RNA polymerase II transcription subunit 21

1.5e-41

70.5

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNAN-IAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ +N FGTLQRDAPPV+LSPNYPEPP       +A    EQPK +SA          +L AALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNAN-IAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEN

Query:  DAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        D VGQELQKQLEAAEKELKQVQELF Q ADNCLN+KK +
Subjt:  DAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

Arabidopsis top hits

e value

%identity

Alignment

AT4G04780.1 mediator 21

1.0e-42

70.5

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Query:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNAN-IAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ +N FGTLQRDAPPV+LSPNYPEPP       +A    EQPK +SA          +L AALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNAN-IAEQPKLMSA----------SLEAALPLSDGGEEEQLKRIAELQAEN

Query:  DAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        D VGQELQKQLEAAEKELKQVQELF Q ADNCLN+KK +
Subjt:  DAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

Sequences

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CDS sequence

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ATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTACAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAA
TTATCCCGAACCGCCGCCTCACGAACCTACAGAGGGCAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTTCTTTGGAAGCAGCATTGCCTTTATCTGATGGGG
GTGAAGAAGAGCAGTTGAAAAGGATTGCAGAGCTACAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAGAAAGAATTAAAACAGGTT
CAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGATTGA

mRNA sequence

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Protein sequence

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MDIISQLQEQVNTIAALAYNTFGTLQRDAPPVRLSPNYPEPPPHEPTEGNANIAEQPKLMSASLEAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV
QELFSQVADNCLNLKKAD

Spg029033 (gene) of Sponge gourd (cylindrica) v1 genome