; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029042 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029042
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold5:15751947..15759856
RNA-Seq ExpressionSpg029042
SyntenySpg029042
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]3.5e-2333.22Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL
        M SSSR PKH WTK E+A LVE LV LV+AG WRSDNGTF+ GYL +       K P     AS I+ +  +  R  HAL  +R   C  +     K+ +
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL

Query:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS
        V E    DD+S+ + +                                                  DT  PP   P  NMS D+   T  +R       S
Subjt:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS

Query:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK
         GSKRKR G      +IV +      EQL  IAEW   +R      R +IV HL  +PEL    R +LM IL  N+   ++F  +P  +K  YC L+L +
Subjt:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK

Query:  H
        +
Subjt:  H

KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]5.9e-3138.55Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLR-------CLH-ALPVRD----------LAC
        MASSSRA KH WTK E+AKLVE LV LV AG WRSDNGTF+ GYL +  +        + I     I  R        LH + P  D             
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLR-------CLH-ALPVRD----------LAC

Query:  CYRIRLPKRELVREDDFSNASPENDTH---IPPFTMPTANMSEDEPRGTPGSRSCTTERSSRGSKRKRSGSDAHITEIVTSFTE----QLKSIAEWLKEK
         +            + F++  P  D+H   I        +MS DE  G    ++      S GSKRKR      + E+++S TE    QLK+I +W KEK
Subjt:  CYRIRLPKRELVREDDFSNASPENDTH---IPPFTMPTANMSEDEPRGTPGSRSCTTERSSRGSKRKRSGSDAHITEIVTSFTE----QLKSIAEWLKEK

Query:  RATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDKH
        RATEV+ R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKL+YC +LL+ +
Subjt:  RATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDKH

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-2333.22Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL
        M SSSR PKH WTK E+A LVE LV LV+AG WRSDNGTF+ GYL +       K P     AS I+ +  +  R  HAL  +R   C  +     K+ +
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL

Query:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS
        V E    DD+S+ + +                                                  DT  PP   P  NMS D+   T  +R       S
Subjt:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS

Query:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK
         GSKRKR G      +IV +      EQL  IAEW   +R      R +IV HL  +PEL    R +LM IL  N+   ++F  +P  +K  YC L+L +
Subjt:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK

Query:  H
        +
Subjt:  H

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-2333.22Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL
        M SSSR PKH WTK E+A LVE LV LV+AG WRSDNGTF+ GYL +       K P     AS I+ +  +  R  HAL  +R   C  +     K+ +
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL

Query:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS
        V E    DD+S+ + +                                                  DT  PP   P  NMS D+   T  +R       S
Subjt:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS

Query:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK
         GSKRKR G      +IV +      EQL  IAEW   +R      R +IV HL  +PEL    R +LM IL  N+   ++F  +P  +K  YC L+L +
Subjt:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK

Query:  H
        +
Subjt:  H

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.0e-2733.55Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLRC--------LHAL-PVRDLACC-------Y
        MAS SRAPKH WTK E+ K VE LV LV +G WRSDNGTF+ GYL +  +           N QE   + C         HA+  +R  +C        +
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLRC--------LHAL-PVRDLACC-------Y

Query:  RIRLPKREL------------------------------------VREDDFSNAS-----------PENDTH---IPPFTMPTANMSEDEPRGTPGSRSC
        +  + +R+L                                     R + F N             P  D+H   IP       +MS DE  G    ++ 
Subjt:  RIRLPKREL------------------------------------VREDDFSNAS-----------PENDTH---IPPFTMPTANMSEDEPRGTPGSRSC

Query:  TTERSSRGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYC
             S  SKRKR        E++ S      EQLK+IA+W KEKRA EV+ R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKL+YC
Subjt:  TTERSSRGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYC

Query:  ELLL
         +LL
Subjt:  ELLL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.9e-2733.55Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLRC--------LHAL-PVRDLACC-------Y
        MAS SRAPKH WTK E+ K VE LV LV +G WRSDNGTF+ GYL +  +           N QE   + C         HA+  +R  +C        +
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLRC--------LHAL-PVRDLACC-------Y

Query:  RIRLPKREL------------------------------------VREDDFSNAS-----------PENDTH---IPPFTMPTANMSEDEPRGTPGSRSC
        +  + +R+L                                     R + F N             P  D+H   IP       +MS DE  G    ++ 
Subjt:  RIRLPKREL------------------------------------VREDDFSNAS-----------PENDTH---IPPFTMPTANMSEDEPRGTPGSRSC

Query:  TTERSSRGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYC
             S  SKRKR        E++ S      EQLK+IA+W KEKRA EV+ R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKL+YC
Subjt:  TTERSSRGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYC

Query:  ELLL
         +LL
Subjt:  ELLL

A0A5A7U0H7 Retrotransposon protein1.9e-2733.55Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLRC--------LHAL-PVRDLACC-------Y
        MAS SRAPKH WTK E+ K VE LV LV +G WRSDNGTF+ GYL +  +           N QE   + C         HA+  +R  +C        +
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLRC--------LHAL-PVRDLACC-------Y

Query:  RIRLPKREL------------------------------------VREDDFSNAS-----------PENDTH---IPPFTMPTANMSEDEPRGTPGSRSC
        +  + +R+L                                     R + F N             P  D+H   IP       +MS DE  G    ++ 
Subjt:  RIRLPKREL------------------------------------VREDDFSNAS-----------PENDTH---IPPFTMPTANMSEDEPRGTPGSRSC

Query:  TTERSSRGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYC
             S  SKRKR        E++ S      EQLK+IA+W KEKRA EV+ R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKL+YC
Subjt:  TTERSSRGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYC

Query:  ELLL
         +LL
Subjt:  ELLL

A0A5A7UME4 Retrotransposon protein1.7e-2333.22Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL
        M SSSR PKH WTK E+A LVE LV LV+AG WRSDNGTF+ GYL +       K P     AS I+ +  +  R  HAL  +R   C  +     K+ +
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL

Query:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS
        V E    DD+S+ + +                                                  DT  PP   P  NMS D+   T  +R       S
Subjt:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS

Query:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK
         GSKRKR G      +IV +      EQL  IAEW   +R      R +IV HL  +PEL    R +LM IL  N+   ++F  +P  +K  YC L+L +
Subjt:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK

Query:  H
        +
Subjt:  H

A0A5D3BZU3 Retrotransposon protein2.9e-3138.55Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLR-------CLH-ALPVRD----------LAC
        MASSSRA KH WTK E+AKLVE LV LV AG WRSDNGTF+ GYL +  +        + I     I  R        LH + P  D             
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLR-------CLH-ALPVRD----------LAC

Query:  CYRIRLPKRELVREDDFSNASPENDTH---IPPFTMPTANMSEDEPRGTPGSRSCTTERSSRGSKRKRSGSDAHITEIVTSFTE----QLKSIAEWLKEK
         +            + F++  P  D+H   I        +MS DE  G    ++      S GSKRKR      + E+++S TE    QLK+I +W KEK
Subjt:  CYRIRLPKRELVREDDFSNASPENDTH---IPPFTMPTANMSEDEPRGTPGSRSCTTERSSRGSKRKRSGSDAHITEIVTSFTE----QLKSIAEWLKEK

Query:  RATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDKH
        RATEV+ R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKL+YC +LL+ +
Subjt:  RATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDKH

A0A5D3DPR5 Retrotransposon protein1.7e-2333.22Show/hide
Query:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL
        M SSSR PKH WTK E+A LVE LV LV+AG WRSDNGTF+ GYL +       K P     AS I+ +  +  R  HAL  +R   C  +     K+ +
Subjt:  MASSSRAPKHIWTKNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKY-----HKFPFRYSFASAINYQEVIWLRCLHAL-PVRDLACC-YRIRLPKREL

Query:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS
        V E    DD+S+ + +                                                  DT  PP   P  NMS D+   T  +R       S
Subjt:  VRE----DDFSNASPEN-------------------------------------------------DTHIPPFTMPTANMSEDEPRGTPGSRSCTTERSS

Query:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK
         GSKRKR G      +IV +      EQL  IAEW   +R      R +IV HL  +PEL    R +LM IL  N+   ++F  +P  +K  YC L+L +
Subjt:  RGSKRKRSGSDAHITEIVTSF----TEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELLLDK

Query:  H
        +
Subjt:  H

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAGATGAGGAAGAGGCGCATTCCTTTTATAATGCAGGGCTTTAGCTTTGATCTAGGGTTTCACTTTCGCCTGCAAGTCTGCAACGTTGCTCTTCCCCCCAATCG
GATCTCTTCGTTGCTCTTGTTCTTGTTCTCTCAATCAGATCTCTTCGTCTCTCTTCTCCATCGATTTATTCTTCTCTCAGTCGTATCGATTCGCCTTCTTCCTTCATGTG
GGGCTGACTCCTTCGTGGAAGGAAACTTGTTTTCTTCACATACTCTGCTTCCCCATCTCCTCCTAGTAAGAATGGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACA
AAGAACGAGGATGCGAAGCTGGTGGAGTCCCTCGTGTTCTTAGTTCATGCAGGCAGTTGGAGGTCCGATAATGGGACATTCAAAGCTGGGTATCTGAGAAAATATCATAA
GTTTCCCTTTCGGTACTCCTTTGCGTCTGCCATAAACTATCAAGAAGTGATTTGGCTAAGATGTCTGCATGCGTTACCTGTCAGGGATTTAGCATGCTGCTACCGCATCC
GGCTGCCCAAGCGGGAGTTAGTGAGGGAAGATGACTTCTCCAATGCATCCCCAGAGAACGACACCCACATCCCGCCATTCACCATGCCTACTGCGAACATGTCAGAGGAT
GAACCTCGGGGTACGCCAGGCAGTCGAAGTTGCACAACAGAAAGGTCGTCACGTGGGAGCAAGAGGAAGAGGTCTGGGTCTGACGCACATATAACAGAAATTGTCACCTC
GTTTACAGAGCAACTGAAGTCAATTGCAGAGTGGCTGAAAGAAAAACGTGCCACAGAGGTTGACTTCCGAGATAAAATTGTCACCCACTTGATGGAGGTACCGGAATTGG
ATAATCGGAAGAGGGTCAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGCTGCTCTGAAGTTGGACTATTGTGAACTCCTC
CTGGACAAACACGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAGATGAGGAAGAGGCGCATTCCTTTTATAATGCAGGGCTTTAGCTTTGATCTAGGGTTTCACTTTCGCCTGCAAGTCTGCAACGTTGCTCTTCCCCCCAATCG
GATCTCTTCGTTGCTCTTGTTCTTGTTCTCTCAATCAGATCTCTTCGTCTCTCTTCTCCATCGATTTATTCTTCTCTCAGTCGTATCGATTCGCCTTCTTCCTTCATGTG
GGGCTGACTCCTTCGTGGAAGGAAACTTGTTTTCTTCACATACTCTGCTTCCCCATCTCCTCCTAGTAAGAATGGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACA
AAGAACGAGGATGCGAAGCTGGTGGAGTCCCTCGTGTTCTTAGTTCATGCAGGCAGTTGGAGGTCCGATAATGGGACATTCAAAGCTGGGTATCTGAGAAAATATCATAA
GTTTCCCTTTCGGTACTCCTTTGCGTCTGCCATAAACTATCAAGAAGTGATTTGGCTAAGATGTCTGCATGCGTTACCTGTCAGGGATTTAGCATGCTGCTACCGCATCC
GGCTGCCCAAGCGGGAGTTAGTGAGGGAAGATGACTTCTCCAATGCATCCCCAGAGAACGACACCCACATCCCGCCATTCACCATGCCTACTGCGAACATGTCAGAGGAT
GAACCTCGGGGTACGCCAGGCAGTCGAAGTTGCACAACAGAAAGGTCGTCACGTGGGAGCAAGAGGAAGAGGTCTGGGTCTGACGCACATATAACAGAAATTGTCACCTC
GTTTACAGAGCAACTGAAGTCAATTGCAGAGTGGCTGAAAGAAAAACGTGCCACAGAGGTTGACTTCCGAGATAAAATTGTCACCCACTTGATGGAGGTACCGGAATTGG
ATAATCGGAAGAGGGTCAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGCTGCTCTGAAGTTGGACTATTGTGAACTCCTC
CTGGACAAACACGGTTGA
Protein sequenceShow/hide protein sequence
MKEMRKRRIPFIMQGFSFDLGFHFRLQVCNVALPPNRISSLLLFLFSQSDLFVSLLHRFILLSVVSIRLLPSCGADSFVEGNLFSSHTLLPHLLLVRMASSSRAPKHIWT
KNEDAKLVESLVFLVHAGSWRSDNGTFKAGYLRKYHKFPFRYSFASAINYQEVIWLRCLHALPVRDLACCYRIRLPKRELVREDDFSNASPENDTHIPPFTMPTANMSED
EPRGTPGSRSCTTERSSRGSKRKRSGSDAHITEIVTSFTEQLKSIAEWLKEKRATEVDFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPAALKLDYCELL
LDKHG