; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029050 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029050
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold5:14464354..14466193
RNA-Seq ExpressionSpg029050
SyntenySpg029050
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036474.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-2848.06Show/hide
Query:  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEML
        ++ LA  MF++W   M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F +GYLA+L  M+ EK+  C +  T  IDC +K+LKR   AI EM 
Subjt:  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEML

Query:  GPGCSGFGWNEEYKYMEAEKDVFNVWVKV
        GP CSGFGWN+E K + AEK++F+ WV+V
Subjt:  GPGCSGFGWNEEYKYMEAEKDVFNVWVKV

KAA0036924.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-2948.44Show/hide
Query:  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEML
        +++LA  MF +W   M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F  GYLA+L  M+ EK+ GC +  T  IDC +K+LKR   AI EM 
Subjt:  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEML

Query:  GPGCSGFGWNEEYKYMEAEKDVFNVWVK
        GP CSGFGWN+E K + AEK++F+ WV+
Subjt:  GPGCSGFGWNEEYKYMEAEKDVFNVWVK

KAA0041588.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-2751.33Show/hide
Query:  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKY
        M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F  GYLA+L  M+ EK+ GC +  T  IDC +K+LKR   AIVEM GP CSGFGWN+E K 
Subjt:  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKY

Query:  MEAEKDVFNVWVK
        + AEK++F+ WV+
Subjt:  MEAEKDVFNVWVK

KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-2746.92Show/hide
Query:  KEHLATRMFVEW--GQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVE
        ++ LA  MF +W    +M    +  KH WT+ ++AKLVECLV+LV  GGWR+NN  F  GYLA+L  M+ +K+S   I  ++ +DC VKSLK+   +   
Subjt:  KEHLATRMFVEW--GQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVE

Query:  MLGPGCSGFGWNEEYKYMEAEKDVFNVWVK
        M GP CSGFGWNE+++ + AE+D+F+ WVK
Subjt:  MLGPGCSGFGWNEEYKYMEAEKDVFNVWVK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.7e-2953.1Show/hide
Query:  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKY
        MA + +  KH WT+ ++ K VECLV+LV  GGWR++N  F+ GYLA+L  M+ EK+ G  I  + TIDC VKSLK+   AI EM GP CSGFGWNEE++ 
Subjt:  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKY

Query:  MEAEKDVFNVWVK
        + AE+D+F+ W+K
Subjt:  MEAEKDVFNVWVK

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.3e-2953.1Show/hide
Query:  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKY
        MA + +  KH WT+ ++ K VECLV+LV  GGWR++N  F+ GYLA+L  M+ EK+ G  I  + TIDC VKSLK+   AI EM GP CSGFGWNEE++ 
Subjt:  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKY

Query:  MEAEKDVFNVWVK
        + AE+D+F+ W+K
Subjt:  MEAEKDVFNVWVK

A0A5A7SYW1 Retrotransposon protein1.9e-2848.06Show/hide
Query:  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEML
        ++ LA  MF++W   M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F +GYLA+L  M+ EK+  C +  T  IDC +K+LKR   AI EM 
Subjt:  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEML

Query:  GPGCSGFGWNEEYKYMEAEKDVFNVWVKV
        GP CSGFGWN+E K + AEK++F+ WV+V
Subjt:  GPGCSGFGWNEEYKYMEAEKDVFNVWVKV

A0A5A7T091 Retrotransposon protein7.8e-3048.44Show/hide
Query:  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEML
        +++LA  MF +W   M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F  GYLA+L  M+ EK+ GC +  T  IDC +K+LKR   AI EM 
Subjt:  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEML

Query:  GPGCSGFGWNEEYKYMEAEKDVFNVWVK
        GP CSGFGWN+E K + AEK++F+ WV+
Subjt:  GPGCSGFGWNEEYKYMEAEKDVFNVWVK

A0A5A7TJS2 Retrotransposon protein7.3e-2846.92Show/hide
Query:  KEHLATRMFVEW--GQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVE
        ++ LA  MF +W    +M    +  KH WT+ ++AKLVECLV+LV  GGWR+NN  F  GYLA+L  M+ +K+S   I  ++ +DC VKSLK+   +   
Subjt:  KEHLATRMFVEW--GQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVE

Query:  MLGPGCSGFGWNEEYKYMEAEKDVFNVWVK
        M GP CSGFGWNE+++ + AE+D+F+ WVK
Subjt:  MLGPGCSGFGWNEEYKYMEAEKDVFNVWVK

A0A5A7U0H7 Retrotransposon protein2.3e-2953.1Show/hide
Query:  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKY
        MA + +  KH WT+ ++ K VECLV+LV  GGWR++N  F+ GYLA+L  M+ EK+ G  I  + TIDC VKSLK+   AI EM GP CSGFGWNEE++ 
Subjt:  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKY

Query:  MEAEKDVFNVWVK
        + AE+D+F+ W+K
Subjt:  MEAEKDVFNVWVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCTCCTCTTAACGTTGCTCTCCTCCTTCCACATGTGTATTTTCAGTCTAAGGCCCAAACGGCCCCTAAGGAACATTTGGCTACCCGAATGTTCGTTGAGTGGGG
ACAGAAGATGGCAGGTGTCGAGAAAATCAAGAAGCATGTGTGGACCAGATTCAAGGACGCTAAATTAGTCGAGTGCCTCGTTCAATTGGTCCACAAGGGTGGTTGGAGGG
CAAACAACAATATGTTCGAGGCCGGTTATCTAGCACGATTACACTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATCGACTTGACAATGACGATAGATTGTGAAGTC
AAATCCCTAAAGCGGCAGTCCGGTGCAATTGTCGAGATGTTGGGTCCGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATACATGGAGGCTGAGAAAGATGTGTT
CAATGTGTGGGTCAAGGTAAGTTATTCATTGCATTCGGCTCCATCACTCCCTCCATTTTTCCTCCCTCCACCTCCCTCCATCTCTCCCTCTAATGATTTACTTTATGATG
GCGGCTGCAAAGACGACGACAGTGACGCCGAAGAGGTAGATCGTGGGTGGAGAAGAAAAAATGAGGCATGGGTTGAGGAGCTTTTGCCGTGGTTTGTGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCTCCTCTTAACGTTGCTCTCCTCCTTCCACATGTGTATTTTCAGTCTAAGGCCCAAACGGCCCCTAAGGAACATTTGGCTACCCGAATGTTCGTTGAGTGGGG
ACAGAAGATGGCAGGTGTCGAGAAAATCAAGAAGCATGTGTGGACCAGATTCAAGGACGCTAAATTAGTCGAGTGCCTCGTTCAATTGGTCCACAAGGGTGGTTGGAGGG
CAAACAACAATATGTTCGAGGCCGGTTATCTAGCACGATTACACTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATCGACTTGACAATGACGATAGATTGTGAAGTC
AAATCCCTAAAGCGGCAGTCCGGTGCAATTGTCGAGATGTTGGGTCCGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATACATGGAGGCTGAGAAAGATGTGTT
CAATGTGTGGGTCAAGGTAAGTTATTCATTGCATTCGGCTCCATCACTCCCTCCATTTTTCCTCCCTCCACCTCCCTCCATCTCTCCCTCTAATGATTTACTTTATGATG
GCGGCTGCAAAGACGACGACAGTGACGCCGAAGAGGTAGATCGTGGGTGGAGAAGAAAAAATGAGGCATGGGTTGAGGAGCTTTTGCCGTGGTTTGTGCAGTAG
Protein sequenceShow/hide protein sequence
MQSPLNVALLLPHVYFQSKAQTAPKEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEV
KSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEKDVFNVWVKVSYSLHSAPSLPPFFLPPPPSISPSNDLLYDGGCKDDDSDAEEVDRGWRRKNEAWVEELLPWFVQ