; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029063 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029063
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold11:22311196..22321129
RNA-Seq ExpressionSpg029063
SyntenySpg029063
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]1.2e-1337.73Show/hide
Query:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVEIELSVHDKLPKCA
        PRGNR SLQT EL KT             SL T+SVL DND VVSAG A LRQRRW                             VEIEL V D LP  A
Subjt:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVEIELSVHDKLPKCA

Query:  KSFPIKLQFVGGVVHCVISQTELCQGCTSCMSKGFQGFRCVV-LHVKYSISKISMFIRFNGSVG----------------------STGVMSSRTNKRRR
        K                +S     +G +  +S      +C V L  K S  + + ++ + GS G                        GVM  RT++RRR
Subjt:  KSFPIKLQFVGGVVHCVISQTELCQGCTSCMSKGFQGFRCVV-LHVKYSISKISMFIRFNGSVG----------------------STGVMSSRTNKRRR

Query:  QNQDGTQDPTQGQSERGSST
        QNQDGTQDPTQGQSE GSST
Subjt:  QNQDGTQDPTQGQSERGSST

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.6e-1858.04Show/hide
Query:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVML----------VEIEL
        PRGNR SLQT EL KT             SL T+SVLRDNDAVVSAG     +   +A RAPLHRR SKRWLYWACPT RR VML          VEIEL
Subjt:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVML----------VEIEL

Query:  SVHDKLPKCAKS
        SV D LP  A+S
Subjt:  SVHDKLPKCAKS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.6e-1858.04Show/hide
Query:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVML----------VEIEL
        PRGNR SLQT EL KT             SL T+SVLRDNDAVVSAG     +   +A RAPLHRR SKRWLYWACPT RR VML          VEIEL
Subjt:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVML----------VEIEL

Query:  SVHDKLPKCAKS
        SV D LP  A+S
Subjt:  SVHDKLPKCAKS

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]5.5e-1466.67Show/hide
Query:  YCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVE
        Y VHT YISLLT+SVLRDN+ ++S    PL +   SAGR PLHRR SKRWLYWAC TQR  VMLV+
Subjt:  YCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVE

TYK27372.1 uncharacterized protein E5676_scaffold325G00500 [Cucumis melo var. makuwa]9.3e-1437.56Show/hide
Query:  QPRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVEIELSVHDKLPKC
        +PRGNR SLQT EL KT             SL T+SVL DND VVSAG A LRQRRW                             VEIEL V D LP  
Subjt:  QPRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVEIELSVHDKLPKC

Query:  AKSFPIKLQFVGGVVHCVISQTELCQGCTSCMSKGFQGFRCVV-LHVKYSISKISMFIRFNGSVG----------------------STGVMSSRTNKRR
        AK                +S     +G +  +S      +C V L  K S  + + ++ + GS G                        GVM  RT++RR
Subjt:  AKSFPIKLQFVGGVVHCVISQTELCQGCTSCMSKGFQGFRCVV-LHVKYSISKISMFIRFNGSVG----------------------STGVMSSRTNKRR

Query:  RQNQDGTQDPTQGQSERGSST
        RQNQDGTQDPTQGQSE GSST
Subjt:  RQNQDGTQDPTQGQSERGSST

TrEMBL top hitse value%identityAlignment
A0A5A7TPS6 Retrotrans_gag domain-containing protein5.9e-1437.73Show/hide
Query:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVEIELSVHDKLPKCA
        PRGNR SLQT EL KT             SL T+SVL DND VVSAG A LRQRRW                             VEIEL V D LP  A
Subjt:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVEIELSVHDKLPKCA

Query:  KSFPIKLQFVGGVVHCVISQTELCQGCTSCMSKGFQGFRCVV-LHVKYSISKISMFIRFNGSVG----------------------STGVMSSRTNKRRR
        K                +S     +G +  +S      +C V L  K S  + + ++ + GS G                        GVM  RT++RRR
Subjt:  KSFPIKLQFVGGVVHCVISQTELCQGCTSCMSKGFQGFRCVV-LHVKYSISKISMFIRFNGSVG----------------------STGVMSSRTNKRRR

Query:  QNQDGTQDPTQGQSERGSST
        QNQDGTQDPTQGQSE GSST
Subjt:  QNQDGTQDPTQGQSERGSST

A0A5A7VGQ5 Uncharacterized protein7.9e-1958.04Show/hide
Query:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVML----------VEIEL
        PRGNR SLQT EL KT             SL T+SVLRDNDAVVSAG     +   +A RAPLHRR SKRWLYWACPT RR VML          VEIEL
Subjt:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVML----------VEIEL

Query:  SVHDKLPKCAKS
        SV D LP  A+S
Subjt:  SVHDKLPKCAKS

A0A5D3BG85 Uncharacterized protein7.9e-1958.04Show/hide
Query:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVML----------VEIEL
        PRGNR SLQT EL KT             SL T+SVLRDNDAVVSAG     +   +A RAPLHRR SKRWLYWACPT RR VML          VEIEL
Subjt:  PRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVML----------VEIEL

Query:  SVHDKLPKCAKS
        SV D LP  A+S
Subjt:  SVHDKLPKCAKS

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein2.6e-1466.67Show/hide
Query:  YCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVE
        Y VHT YISLLT+SVLRDN+ ++S    PL +   SAGR PLHRR SKRWLYWAC TQR  VMLV+
Subjt:  YCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVE

A0A5D3DV36 Retrotrans_gag domain-containing protein4.5e-1437.56Show/hide
Query:  QPRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVEIELSVHDKLPKC
        +PRGNR SLQT EL KT             SL T+SVL DND VVSAG A LRQRRW                             VEIEL V D LP  
Subjt:  QPRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRRWSAGRAPLHRRASKRWLYWACPTQRRLVMLVEIELSVHDKLPKC

Query:  AKSFPIKLQFVGGVVHCVISQTELCQGCTSCMSKGFQGFRCVV-LHVKYSISKISMFIRFNGSVG----------------------STGVMSSRTNKRR
        AK                +S     +G +  +S      +C V L  K S  + + ++ + GS G                        GVM  RT++RR
Subjt:  AKSFPIKLQFVGGVVHCVISQTELCQGCTSCMSKGFQGFRCVV-LHVKYSISKISMFIRFNGSVG----------------------STGVMSSRTNKRR

Query:  RQNQDGTQDPTQGQSERGSST
        RQNQDGTQDPTQGQSE GSST
Subjt:  RQNQDGTQDPTQGQSERGSST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGAGTGAATTCCGTCTTGCGAAACTATGTCCCCAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTCGAGTCGGCGATGCTGGCCACTCTCACCCA
TGCAGATCAAAGGATAATCTCTCATAAACAGGAGTTCATAGATAGCTCAGGATTAAGAACGAGTTACCTAGCCTCCGCGCGCCACCGTCGTCGCCCCTTTTCCATTGCAG
ATCTGCACACCGCCGTCGCTCCTCACTGCGCGCCACCGTCTGCCCGCCGTCACCGCCGTGAGTTCCTTTGCAACCAAGCAGCCGCACACCGCTGCCGTCTTCAGCCAAAC
AGTTGCACGCCGCCTCGAGCCGATTTAGATCTTGAGCGTTCGACGATTCGACTAATAAAACAGTGGATAAGGAGGTTCGAGCATCCATCTTCGGCGTCATCTTCGTTCTC
CGGCCAACAGCTATTCCCTCCGGCGAGTCCCAACGGTCCAGCAGCGTTCACAGACGACGTTGGTGCGAGCTTCAGAGGCAGTTCGACCGTGGGTTTTGCAACAAAGGCCG
GCGGATCTCCTTCTTCAGCGAGCGGCGGTGTTGGCAGACGTTCGTGGTGGCTGTTCGGAGAAAAAGAAGAAGACTTCGGCCAGCAGCTGTTCCTTCACAGATTCGGGGCG
ACTCTAGCATTTTTCCGACGTAACTTCACGGTTTCCGACAGCGGCGAGTTCTATAGTGGTATACCTCCACGTGGACAAGGTCGAGGACGTGGACGCGGACATGGTCGTGG
AAGGGGTGGTAGAGGCCTAGCACTCCCGGAGCAAGTAGATCCTCATATCGATCAGCCAAGAGGAAATAGGCTGAGTCTACAGACCAGGGAACTAGCCAAGACTCCCGAGG
CTATATGGTACTGTGTGCACACAGGTTATATTTCGTTGTTGACGATGAGTGTACTTCGTGACAACGATGCTGTCGTGAGTGCTGGGTGGGCCCCACTACGACAAAGACGA
TGGAGTGCTGGGCGAGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATTAGTCATGTTAGTAGAGATCGAGCTCTCGGT
GCATGATAAACTGCCAAAGTGTGCTAAAAGCTTCCCGATCAAGCTCCAGTTCGTGGGTGGAGTTGTACATTGTGTTATTTCCCAAACTGAGTTATGTCAGGGATGCACTT
CATGTATGTCTAAAGGTTTTCAAGGATTCCGTTGTGTTGTGTTGCATGTAAAGTATTCCATATCGAAGATTAGCATGTTTATCAGGTTCAACGGTTCAGTAGGGTCAACA
GGAGTCATGTCATCACGTACCAACAAACGACGCAGGCAGAATCAGGACGGGACACAAGATCCTACCCAGGGTCAATCTGAAAGAGGATCCAGTACCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGAGTGAATTCCGTCTTGCGAAACTATGTCCCCAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTCGAGTCGGCGATGCTGGCCACTCTCACCCA
TGCAGATCAAAGGATAATCTCTCATAAACAGGAGTTCATAGATAGCTCAGGATTAAGAACGAGTTACCTAGCCTCCGCGCGCCACCGTCGTCGCCCCTTTTCCATTGCAG
ATCTGCACACCGCCGTCGCTCCTCACTGCGCGCCACCGTCTGCCCGCCGTCACCGCCGTGAGTTCCTTTGCAACCAAGCAGCCGCACACCGCTGCCGTCTTCAGCCAAAC
AGTTGCACGCCGCCTCGAGCCGATTTAGATCTTGAGCGTTCGACGATTCGACTAATAAAACAGTGGATAAGGAGGTTCGAGCATCCATCTTCGGCGTCATCTTCGTTCTC
CGGCCAACAGCTATTCCCTCCGGCGAGTCCCAACGGTCCAGCAGCGTTCACAGACGACGTTGGTGCGAGCTTCAGAGGCAGTTCGACCGTGGGTTTTGCAACAAAGGCCG
GCGGATCTCCTTCTTCAGCGAGCGGCGGTGTTGGCAGACGTTCGTGGTGGCTGTTCGGAGAAAAAGAAGAAGACTTCGGCCAGCAGCTGTTCCTTCACAGATTCGGGGCG
ACTCTAGCATTTTTCCGACGTAACTTCACGGTTTCCGACAGCGGCGAGTTCTATAGTGGTATACCTCCACGTGGACAAGGTCGAGGACGTGGACGCGGACATGGTCGTGG
AAGGGGTGGTAGAGGCCTAGCACTCCCGGAGCAAGTAGATCCTCATATCGATCAGCCAAGAGGAAATAGGCTGAGTCTACAGACCAGGGAACTAGCCAAGACTCCCGAGG
CTATATGGTACTGTGTGCACACAGGTTATATTTCGTTGTTGACGATGAGTGTACTTCGTGACAACGATGCTGTCGTGAGTGCTGGGTGGGCCCCACTACGACAAAGACGA
TGGAGTGCTGGGCGAGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATTAGTCATGTTAGTAGAGATCGAGCTCTCGGT
GCATGATAAACTGCCAAAGTGTGCTAAAAGCTTCCCGATCAAGCTCCAGTTCGTGGGTGGAGTTGTACATTGTGTTATTTCCCAAACTGAGTTATGTCAGGGATGCACTT
CATGTATGTCTAAAGGTTTTCAAGGATTCCGTTGTGTTGTGTTGCATGTAAAGTATTCCATATCGAAGATTAGCATGTTTATCAGGTTCAACGGTTCAGTAGGGTCAACA
GGAGTCATGTCATCACGTACCAACAAACGACGCAGGCAGAATCAGGACGGGACACAAGATCCTACCCAGGGTCAATCTGAAAGAGGATCCAGTACCAAGTGA
Protein sequenceShow/hide protein sequence
MGRSEFRLAKLCPQLSIRSYPQNGRLVESAMLATLTHADQRIISHKQEFIDSSGLRTSYLASARHRRRPFSIADLHTAVAPHCAPPSARRHRREFLCNQAAAHRCRLQPN
SCTPPRADLDLERSTIRLIKQWIRRFEHPSSASSSFSGQQLFPPASPNGPAAFTDDVGASFRGSSTVGFATKAGGSPSSASGGVGRRSWWLFGEKEEDFGQQLFLHRFGA
TLAFFRRNFTVSDSGEFYSGIPPRGQGRGRGRGHGRGRGGRGLALPEQVDPHIDQPRGNRLSLQTRELAKTPEAIWYCVHTGYISLLTMSVLRDNDAVVSAGWAPLRQRR
WSAGRAPLHRRASKRWLYWACPTQRRLVMLVEIELSVHDKLPKCAKSFPIKLQFVGGVVHCVISQTELCQGCTSCMSKGFQGFRCVVLHVKYSISKISMFIRFNGSVGST
GVMSSRTNKRRRQNQDGTQDPTQGQSERGSSTK