CuGenDBv2

Gene ID	Spg029073
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	scaffold11:22774392..22781866
RNA-Seq Expression	Spg029073
Synteny	Spg029073
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.4e-28

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLAN QRE +NFE KF+YNVSSASQEE+GVKMAREKLC+ ED TG+E SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

KAA0059666.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.5e-27

78.82

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +D +NN LHVPEGPIT+ KAKKIQE FTLHVQKLAN QRE +NFE KF+YNVSSASQEE+ VKMAREKLC+LED TG+E SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]

1.9e-28

81.18

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +DSINN LHVPEGPIT+ KAKKIQE FTLHVQKL N QRE +NFEPKF+YNVSSASQEE+ +KMA EKLCSLED TGDE SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

7.0e-28

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLAN QRE +NFE KF+YNVSSASQEE+GVKMAREKLC+LED T +E SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

7.0e-28

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLAN QRE +NFE KF+YNVSSASQEE+ VKMAREKLC+LED TG+E SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

1.2e-28

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLAN QRE +NFE KF+YNVSSASQEE+GVKMAREKLC+ ED TG+E SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

A0A5A7UZP1 Transposon Ty3-I Gag-Pol polyprotein

1.7e-27

78.82

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +D +NN LHVPEGPIT+ KAKKIQE FTLHVQKLAN QRE +NFE KF+YNVSSASQEE+ VKMAREKLC+LED TG+E SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein

9.0e-29

81.18

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +DSINN LHVPEGPIT+ KAKKIQE FTLHVQKL N QRE +NFEPKF+YNVSSASQEE+ +KMA EKLCSLED TGDE SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

A0A5D3BWE8 F15O4.13

3.4e-28

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLAN QRE +NFE KF+YNVSSASQEE+GVKMAREKLC+LED T +E SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

A0A5D3DRJ1 F15O4.13

3.4e-28

Show/hide

Query:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLAN QRE +NFE KF+YNVSSASQEE+ VKMAREKLC+LED TG+E SVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTCAATCAATAATCCATTGCATGTACCTGAAGGACCAATCACAAGGAGCAAAGCAAAGAAGATACAAGAGGTTTTCACACTGCACGTTCAAAAGCTAGCAAATAC
ACAACGAGAGGCCGAGAATTTTGAACCCAAATTTGTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGGGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAG
ATGTCACGGGGGACGAAAACAGTGTGCAGAATTTGCTAAAGATGCTGACTTCTTCAAGAAATTGGCTTGCGTGCCCCAACCTTCTCTTGCCAGCTTGCACATCAGTCACA
CATCAGGGCGACCATCCATCCGGCTGTCATCGTACGATTCACGCTCTAGGATCTGCGCCTGCGCTGAAGATAACTTGGGCAAGGAAACAACTACAGAAACCATGCGTTAG
CGGGCCGGTTCAAGTGGTTTTTGAAACTGGTTTAGCACATTTTAAGCCGATTCAAAGTGTTTTGAAGCTGGTTCAGTGCGGTTTAGCCCAGTTCTTGATGGTTCAAAGGC
TGGAGATCCATGCTCGGCTTCAAAAACAGAGGATATCTGGAAAAACCCAGAAATGCGACTGCATTTCTGGCAAGGCAAAAACCAAATGCGACCGCATTTCTTGGCAGATG
AAGGCAGTTTTGAGTCTGTCGCGGGTCATTTTGAACGAGTGTTTTATGCACCTAACTGGCTGTTTTGACTCCGAAACTGACTGGGCTACCTACCAACACATTTTTTGTGA
CTTTTCAACCACTCCCCACTCTATAAAAGGCCTCGATTCGAAAGGAAATTCAAGCAGAACTCACTGGGAAGAAGAGGGTGGTGACAGAACCCTAGTAGTAGACACCCATG
AGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDSINNPLHVPEGPITRSKAKKIQEVFTLHVQKLANTQREAENFEPKFVYNVSSASQEENGVKMAREKLCSLEDVTGDENSVQNLLKMLTSSRNWLACPNLLLPACTSVT
HQGDHPSGCHRTIHALGSAPALKITWARKQLQKPCVSGPVQVVFETGLAHFKPIQSVLKLVQCGLAQFLMVQRLEIHARLQKQRISGKTQKCDCISGKAKTKCDRISWQM
KAVLSLSRVILNECFMHLTGCFDSETDWATYQHIFCDFSTTPHSIKGLDSKGNSSRTHWEEEGGDRTLVVDTHE

Spg029073 (gene) of Sponge gourd (cylindrica) v1 genome