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Spg029105 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029105
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold11:23311729..23314417
RNA-Seq ExpressionSpg029105
SyntenySpg029105
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]3.7e-1333.92Show/hide
Query:  FFHNFPPKISEHLRERMKEEEEEDFRGLRLKKIGKAHAKPAIAESGFNLSTSGFLFGLSYTEGTKRAQDFRAKQEDLWRKIEGSRKPQICLVCVPGVSGP
        F H+F  K+SE+ +ER+KEEEEE FRGLRLKK+ K      +   G  ++    L GLSY EGT                                    
Subjt:  FFHNFPPKISEHLRERMKEEEEEDFRGLRLKKIGKAHAKPAIAESGFNLSTSGFLFGLSYTEGTKRAQDFRAKQEDLWRKIEGSRKPQICLVCVPGVSGP

Query:  IGWESRFHSFRPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAGRAPLHRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPSLLK
                  RPRGNR SLQT KL KT              L TLSVLRDNDAV+               L+   PT       VEIELP+PDTLP+  +
Subjt:  IGWESRFHSFRPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAGRAPLHRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPSLLK

Query:  APDQAPEGQRVSLEGDDVRWLHAIFRA
                   S E +   WL   F +
Subjt:  APDQAPEGQRVSLEGDDVRWLHAIFRA

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.1e-2453.96Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVLRDNDAVVSAG            RAPLHRRTSK WLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPSLLKAPDQAPEGQRVSLEGDDVRWLHAIFRAK
         VPDTLP+  ++ +       + + GDDV WLH +FRAK
Subjt:  PVPDTLPSLLKAPDQAPEGQRVSLEGDDVRWLHAIFRAK

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]2.1e-2453.96Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVLRDNDAVVSAG            RAPLHRRTSK WLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPSLLKAPDQAPEGQRVSLEGDDVRWLHAIFRAK
         VPDTLP+  ++ +       + + GDDV WLH +FRAK
Subjt:  PVPDTLPSLLKAPDQAPEGQRVSLEGDDVRWLHAIFRAK

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]2.4e-1263.64Show/hide
Query:  YRVHTGYILLLTLSVLRDNDAVV------------SAGRAPLHRRTSKCWLYWACPTQRRSVMLVE
        YRVHT YI LLTLSVLRDN+ ++            SAGR PLHRRTSK WLYWAC TQR  VMLV+
Subjt:  YRVHTGYILLLTLSVLRDNDAVV------------SAGRAPLHRRTSKCWLYWACPTQRRSVMLVE

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.2e-1733.9Show/hide
Query:  HHHRQPSLPAHYHPFFHNFPPKISEHLRERMKEEEEEDFRGLRLKKIGKAHAKP---AIAESGFNLSTSGFLFGLSYTEGTKRAQDFRAKQEDLWRKIEG
        HH +      ++  F H+FP K+SEH  ER+KEEEEE FRGLRLKKIGK+  K     I  +GF+    GFL    +++     +  ++ Q+  W  IE 
Subjt:  HHHRQPSLPAHYHPFFHNFPPKISEHLRERMKEEEEEDFRGLRLKKIGKAHAKP---AIAESGFNLSTSGFLFGLSYTEGTKRAQDFRAKQEDLWRKIEG

Query:  SRKPQICLVCVPGVSGPIGWESRFHSFRPRGNRSSLQTRKLAKTPEAIWYRVHT------GYIL------LLTLSVLRDNDAVVSAGRAPL---------
                    G SG   W+       PRGNRSSLQT +L K   +I Y          G +       L TLSVLRDNDAVVS G+            
Subjt:  SRKPQICLVCVPGVSGPIGWESRFHSFRPRGNRSSLQTRKLAKTPEAIWYRVHT------GYIL------LLTLSVLRDNDAVVSAGRAPL---------

Query:  -HRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPS------------------LLKAPDQAPEGQRVSLE--------GDDVRWLHAIFRAKLA
         H       +             +EIEL VPDTLP+                  L   P       R+  E         +DV WLHA+FRAK+A
Subjt:  -HRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPS------------------LLKAPDQAPEGQRVSLE--------GDDVRWLHAIFRAKLA

TrEMBL top hitse value%identityAlignment
A0A5A7UGD0 Uncharacterized protein1.8e-1333.92Show/hide
Query:  FFHNFPPKISEHLRERMKEEEEEDFRGLRLKKIGKAHAKPAIAESGFNLSTSGFLFGLSYTEGTKRAQDFRAKQEDLWRKIEGSRKPQICLVCVPGVSGP
        F H+F  K+SE+ +ER+KEEEEE FRGLRLKK+ K      +   G  ++    L GLSY EGT                                    
Subjt:  FFHNFPPKISEHLRERMKEEEEEDFRGLRLKKIGKAHAKPAIAESGFNLSTSGFLFGLSYTEGTKRAQDFRAKQEDLWRKIEGSRKPQICLVCVPGVSGP

Query:  IGWESRFHSFRPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAGRAPLHRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPSLLK
                  RPRGNR SLQT KL KT              L TLSVLRDNDAV+               L+   PT       VEIELP+PDTLP+  +
Subjt:  IGWESRFHSFRPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAGRAPLHRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPSLLK

Query:  APDQAPEGQRVSLEGDDVRWLHAIFRA
                   S E +   WL   F +
Subjt:  APDQAPEGQRVSLEGDDVRWLHAIFRA

A0A5A7VGQ5 Uncharacterized protein1.0e-2453.96Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVLRDNDAVVSAG            RAPLHRRTSK WLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPSLLKAPDQAPEGQRVSLEGDDVRWLHAIFRAK
         VPDTLP+  ++ +       + + GDDV WLH +FRAK
Subjt:  PVPDTLPSLLKAPDQAPEGQRVSLEGDDVRWLHAIFRAK

A0A5D3BG85 Uncharacterized protein1.0e-2453.96Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVLRDNDAVVSAG            RAPLHRRTSK WLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAG------------RAPLHRRTSKCWLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPSLLKAPDQAPEGQRVSLEGDDVRWLHAIFRAK
         VPDTLP+  ++ +       + + GDDV WLH +FRAK
Subjt:  PVPDTLPSLLKAPDQAPEGQRVSLEGDDVRWLHAIFRAK

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein1.2e-1263.64Show/hide
Query:  YRVHTGYILLLTLSVLRDNDAVV------------SAGRAPLHRRTSKCWLYWACPTQRRSVMLVE
        YRVHT YI LLTLSVLRDN+ ++            SAGR PLHRRTSK WLYWAC TQR  VMLV+
Subjt:  YRVHTGYILLLTLSVLRDNDAVV------------SAGRAPLHRRTSKCWLYWACPTQRRSVMLVE

A0A5D3CAC6 Uncharacterized protein1.6e-1733.9Show/hide
Query:  HHHRQPSLPAHYHPFFHNFPPKISEHLRERMKEEEEEDFRGLRLKKIGKAHAKP---AIAESGFNLSTSGFLFGLSYTEGTKRAQDFRAKQEDLWRKIEG
        HH +      ++  F H+FP K+SEH  ER+KEEEEE FRGLRLKKIGK+  K     I  +GF+    GFL    +++     +  ++ Q+  W  IE 
Subjt:  HHHRQPSLPAHYHPFFHNFPPKISEHLRERMKEEEEEDFRGLRLKKIGKAHAKP---AIAESGFNLSTSGFLFGLSYTEGTKRAQDFRAKQEDLWRKIEG

Query:  SRKPQICLVCVPGVSGPIGWESRFHSFRPRGNRSSLQTRKLAKTPEAIWYRVHT------GYIL------LLTLSVLRDNDAVVSAGRAPL---------
                    G SG   W+       PRGNRSSLQT +L K   +I Y          G +       L TLSVLRDNDAVVS G+            
Subjt:  SRKPQICLVCVPGVSGPIGWESRFHSFRPRGNRSSLQTRKLAKTPEAIWYRVHT------GYIL------LLTLSVLRDNDAVVSAGRAPL---------

Query:  -HRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPS------------------LLKAPDQAPEGQRVSLE--------GDDVRWLHAIFRAKLA
         H       +             +EIEL VPDTLP+                  L   P       R+  E         +DV WLHA+FRAK+A
Subjt:  -HRRTSKCWLYWACPTQRRSVMLVEIELPVPDTLPS------------------LLKAPDQAPEGQRVSLE--------GDDVRWLHAIFRAKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAACTTAAGTTGTTGGGATTTACCAAGTTAAAAGAAGAAAGAAAAGCAAAGGAAAGGAAAAGTAAAAAGAACAAAAGTGAAAAAAAAAAAAAGGGAAAATGGGA
ATGGACAGCAAGACACCACCACCGACAGCCTTCTTTACCAGCCCATTACCATCCATTTTTCCATAATTTTCCACCCAAAATTTCAGAGCACTTGAGGGAGAGAATGAAGG
AGGAAGAAGAAGAAGATTTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTTCAACCTGTCAACCTCTGGTTTTTTA
TTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGAGGAAGATAGAGGGTAGCAGAAAACCTCAAATCTGTCTTGT
CTGTGTTCCGGGCGTTTCTGGGCCAATTGGTTGGGAATCTCGTTTTCATTCCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCG
AGGCTATATGGTATCGTGTGCACACAGGTTATATTCTGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGG
ACTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAAGTCTGCTGAAAGCTCC
AGATCAAGCTCCAGAGGGTCAGCGGGTATCGTTAGAGGGGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGAGTCTTTACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAACTTAAGTTGTTGGGATTTACCAAGTTAAAAGAAGAAAGAAAAGCAAAGGAAAGGAAAAGTAAAAAGAACAAAAGTGAAAAAAAAAAAAAGGGAAAATGGGA
ATGGACAGCAAGACACCACCACCGACAGCCTTCTTTACCAGCCCATTACCATCCATTTTTCCATAATTTTCCACCCAAAATTTCAGAGCACTTGAGGGAGAGAATGAAGG
AGGAAGAAGAAGAAGATTTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTTCAACCTGTCAACCTCTGGTTTTTTA
TTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGAGGAAGATAGAGGGTAGCAGAAAACCTCAAATCTGTCTTGT
CTGTGTTCCGGGCGTTTCTGGGCCAATTGGTTGGGAATCTCGTTTTCATTCCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCG
AGGCTATATGGTATCGTGTGCACACAGGTTATATTCTGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGG
ACTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAAGTCTGCTGAAAGCTCC
AGATCAAGCTCCAGAGGGTCAGCGGGTATCGTTAGAGGGGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGAGTCTTTACTCTAG
Protein sequenceShow/hide protein sequence
MVELKLLGFTKLKEERKAKERKSKKNKSEKKKKGKWEWTARHHHRQPSLPAHYHPFFHNFPPKISEHLRERMKEEEEEDFRGLRLKKIGKAHAKPAIAESGFNLSTSGFL
FGLSYTEGTKRAQDFRAKQEDLWRKIEGSRKPQICLVCVPGVSGPIGWESRFHSFRPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLRDNDAVVSAGRAPLHRR
TSKCWLYWACPTQRRSVMLVEIELPVPDTLPSLLKAPDQAPEGQRVSLEGDDVRWLHAIFRAKLAESLL