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Spg029108 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029108
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold11:23182506..23188557
RNA-Seq ExpressionSpg029108
SyntenySpg029108
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.0e-3052.13Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQ------EDS----GVYQLNQKLYLV-SCRV--FENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDN
        LF LSY EGTK +  F +K        D+     +++ NQKLYLV   R+   EN +  +PRGNR SLQT ELDKT             PLSTLSVLRDN
Subjt:  LFGLSYTEGTKRAQDFRAKQ------EDS----GVYQLNQKLYLV-SCRV--FENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDN

Query:  DAIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        + +  IELPVPD LPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  DAIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-3057.24Show/hide
Query:  VYQLNQKLYLVSCRVFENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTW--------
        V++ NQKLYL      ++ ++DV  RGNRSSLQ+GELD T             PLSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW        
Subjt:  VYQLNQKLYLVSCRVFENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTW--------

Query:  -------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                           F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  -------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-3055.62Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQEDSGVY----------QLNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAI
        LFGLSY EGTK +  F +K     V+          + NQKLYL      E+ +   PRGN+ SLQTGELDKT             PLST SVL DNDA+
Subjt:  LFGLSYTEGTKRAQDFRAKQEDSGVY----------QLNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAI

Query:  VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VEIEL VPDTLPTSAES  S+SS +           FNVSVGSTGIVRGDDVC LH VFRAK AGGPGG
Subjt:  VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.7e-3052.57Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQEDSGVYQLNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDT
        LF LSY EGTK +  F +K    G   L+  L ++       + +  PRGNR SLQTGELDKT              LSTLSVLRDN+A+  IELPVPDT
Subjt:  LFGLSYTEGTKRAQDFRAKQEDSGVYQLNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDT

Query:  LPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        LPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  LPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.3e-3057.24Show/hide
Query:  VYQLNQKLYLVSCRVFENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTW--------
        V++ NQKLYL      ++ ++DV  RGNRSSLQ+GELD T             PLSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW        
Subjt:  VYQLNQKLYLVSCRVFENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTW--------

Query:  -------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                           F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  -------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein4.9e-3152.13Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQ------EDS----GVYQLNQKLYLV-SCRV--FENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDN
        LF LSY EGTK +  F +K        D+     +++ NQKLYLV   R+   EN +  +PRGNR SLQT ELDKT             PLSTLSVLRDN
Subjt:  LFGLSYTEGTKRAQDFRAKQ------EDS----GVYQLNQKLYLV-SCRV--FENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDN

Query:  DAIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        + +  IELPVPD LPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  DAIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7V9N3 Reverse transcriptase1.1e-3057.24Show/hide
Query:  VYQLNQKLYLVSCRVFENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTW--------
        V++ NQKLYL      ++ ++DV  RGNRSSLQ+GELD T             PLSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW        
Subjt:  VYQLNQKLYLVSCRVFENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTW--------

Query:  -------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                           F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  -------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein8.4e-3155.62Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQEDSGVY----------QLNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAI
        LFGLSY EGTK +  F +K     V+          + NQKLYL      E+ +   PRGN+ SLQTGELDKT             PLST SVL DNDA+
Subjt:  LFGLSYTEGTKRAQDFRAKQEDSGVY----------QLNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAI

Query:  VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VEIEL VPDTLPTSAES  S+SS +           FNVSVGSTGIVRGDDVC LH VFRAK AGGPGG
Subjt:  VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein8.4e-3152.57Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQEDSGVYQLNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDT
        LF LSY EGTK +  F +K    G   L+  L ++       + +  PRGNR SLQTGELDKT              LSTLSVLRDN+A+  IELPVPDT
Subjt:  LFGLSYTEGTKRAQDFRAKQEDSGVYQLNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDT

Query:  LPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        LPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  LPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein1.1e-3057.24Show/hide
Query:  VYQLNQKLYLVSCRVFENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTW--------
        V++ NQKLYL      ++ ++DV  RGNRSSLQ+GELD T             PLSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW        
Subjt:  VYQLNQKLYLVSCRVFENEEFDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTW--------

Query:  -------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                           F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  -------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATCCATGGGTCAAAGGGGGAGCCCAAGAGTCAAACCATGAAGAGAAGATCCAAAAAAGAATTGAAGTTGGCCCAAGTTTCAAGCCCAAACCGCGCCTGC
TGGGTCTGGAAACCGCACAGCATCGAGATGCTGTGGGGACCATTTCTTGGCAGACAAGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTG
TCAACTTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATTCTGGGGTGTACCAGTTGAATCAG
AAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCTGAG
GCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACA
CTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCAC
GCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGTTAGTCTTCAAGGCTTAAGATTGCGTTATGAGTTCCATAGATCTGTTGTCACCCCGATAGGTGCC
AACCAAGGGTTAAACTCGGGTTATGGGTCCTTGCATTGTAGTGTGAAAGCTAGTGTCCCGCCTAAAAAGAATGCAAAAGAAAAAGGAATTCCTTGTTTATATTTC
AGGTGCCTAGGTCTAAAATATGAGTTTGGGACCAAACGGGCCAAAAACGAGCTAAACCGAAGCAAAATGACGGAAATGCCCTTGGTCAACGTTGGTCAACGCATG
CTGAAGGCCAAACCAACGTCAAGACCCTCGAAAATGCCACAAACACTCTGGTTTCTCGAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCATCCATGGGTCAAAGGGGGAGCCCAAGAGTCAAACCATGAAGAGAAGATCCAAAAAAGAATTGAAGTTGGCCCAAGTTTCAAGCCCAAACCGCGCCTGC
TGGGTCTGGAAACCGCACAGCATCGAGATGCTGTGGGGACCATTTCTTGGCAGACAAGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTG
TCAACTTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATTCTGGGGTGTACCAGTTGAATCAG
AAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCTGAG
GCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACA
CTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCAC
GCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGTTAGTCTTCAAGGCTTAAGATTGCGTTATGAGTTCCATAGATCTGTTGTCACCCCGATAGGTGCC
AACCAAGGGTTAAACTCGGGTTATGGGTCCTTGCATTGTAGTGTGAAAGCTAGTGTCCCGCCTAAAAAGAATGCAAAAGAAAAAGGAATTCCTTGTTTATATTTC
AGGTGCCTAGGTCTAAAATATGAGTTTGGGACCAAACGGGCCAAAAACGAGCTAAACCGAAGCAAAATGACGGAAATGCCCTTGGTCAACGTTGGTCAACGCATG
CTGAAGGCCAAACCAACGTCAAGACCCTCGAAAATGCCACAAACACTCTGGTTTCTCGAG
Protein sequenceShow/hide protein sequence
MSIHGSKGEPKSQTMKRRSKKELKLAQVSSPNRACWVWKPHSIEMLWGPFLGRQGKAHAKPAIAGSEINLSTSGFLFGLSYTEGTKRAQDFRAKQEDSGVYQLNQ
KLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLH
AVFRAKLAGGPGGVSLQGLRLRYEFHRSVVTPIGANQGLNSGYGSLHCSVKASVPPKKNAKEKGIPCLYFRCLGLKYEFGTKRAKNELNRSKMTEMPLVNVGQRM
LKAKPTSRPSKMPQTLWFLE