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Spg029155 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029155
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPH_TFIIH domain-containing protein
Genome locationscaffold11:23817411..23818340
RNA-Seq ExpressionSpg029155
SyntenySpg029155
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597731.1 General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia]3.2e-1055.41Show/hide
Query:  GVDPCPKANGWKSWNFWKFWTALAFIGFWLFMVFL-----MPPDNWKMGTKYVQKSAKYKTSVKDPGTPGVLEM
        G  PCPKANG+  W     W  + F    +  +F+     +    WKMGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  GVDPCPKANGWKSWNFWKFWTALAFIGFWLFMVFL-----MPPDNWKMGTKYVQKSAKYKTSVKDPGTPGVLEM

KAG7029183.1 putative RNA polymerase II transcription factor B subunit 1-1 [Cucurbita argyrosperma subsp. argyrosperma]3.1e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

XP_022155949.1 probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Momordica charantia]3.1e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

XP_022155950.1 probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Momordica charantia]3.1e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

XP_023539702.1 probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucurbita pepo subsp. pepo]3.1e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

TrEMBL top hitse value%identityAlignment
A0A0A0KYD2 PH_TFIIH domain-containing protein3.3e-0592.86Show/hide
Query:  KMGTKYVQKSAKYKTSVKDPGTPGVLEM
        +MGTKYV KSAKYKTSVKDPGTPGVLEM
Subjt:  KMGTKYVQKSAKYKTSVKDPGTPGVLEM

A0A6J1DNY2 probable RNA polymerase II transcription factor B subunit 1-1 isoform X21.5e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

A0A6J1DRT9 probable RNA polymerase II transcription factor B subunit 1-1 isoform X11.5e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

A0A6J1EXP7 probable RNA polymerase II transcription factor B subunit 1-11.5e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

A0A6J1IB04 probable RNA polymerase II transcription factor B subunit 1-11.5e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAACCAGCTTTTCTATGCAATTTGGGACAAATCCATTCTCTGGTGGGACTTGGAAGAAGTTCAAATTGGTTGCTCGATTTCGTTCGGGAGTACGGTTCCGGG
AGTTGATCCTTGTCCGAAGGCTAATGGCTGGAAATCTTGGAATTTCTGGAAATTTTGGACTGCCCTTGCTTTTATTGGGTTCTGGTTGTTTATGGTGTTTTTAATGCCAC
CAGATAATTGGAAGATGGGAACCAAGTATGTCCAGAAGAGTGCTAAGTACAAGACTTCAGTTAAGGATCCTGGCACGCCTGGCGTTTTGGAAATGGTACTTGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAACCAGCTTTTCTATGCAATTTGGGACAAATCCATTCTCTGGTGGGACTTGGAAGAAGTTCAAATTGGTTGCTCGATTTCGTTCGGGAGTACGGTTCCGGG
AGTTGATCCTTGTCCGAAGGCTAATGGCTGGAAATCTTGGAATTTCTGGAAATTTTGGACTGCCCTTGCTTTTATTGGGTTCTGGTTGTTTATGGTGTTTTTAATGCCAC
CAGATAATTGGAAGATGGGAACCAAGTATGTCCAGAAGAGTGCTAAGTACAAGACTTCAGTTAAGGATCCTGGCACGCCTGGCGTTTTGGAAATGGTACTTGTCTAA
Protein sequenceShow/hide protein sequence
MKKNQLFYAIWDKSILWWDLEEVQIGCSISFGSTVPGVDPCPKANGWKSWNFWKFWTALAFIGFWLFMVFLMPPDNWKMGTKYVQKSAKYKTSVKDPGTPGVLEMVLV