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Spg029206 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029206
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold12:34381879..34394063
RNA-Seq ExpressionSpg029206
SyntenySpg029206
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC72931.1 hypothetical protein OsI_06781 [Oryza sativa Indica Group]1.6e-0933.79Show/hide
Query:  WVASRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLLSDQS-PGVQVELDCLWVVKLLNDKEED
        WV  +V W+       KLN D S+     + G G ++R S G+ + A    + R    +  E  A  EGL L+   +   + VE DC+ VV+LLND E D
Subjt:  WVASRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLLSDQS-PGVQVELDCLWVVKLLNDKEED

Query:  ATELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKASESS
         +EL N + EAK L+  T    +  + R  N+++H+LA +A   S
Subjt:  ATELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKASESS

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.7e-0930.97Show/hide
Query:  GDSLDEQNL-------IKWNISQP--IARSREIEVADNLLPMGVYEGRWIEPAWVASRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVA
        G+++DEQ L       I  NI +   I+++R  +  D  LP G      +   W A            WKLN D SWSEE++  G GWI+    G +V+A
Subjt:  GDSLDEQNL-------IKWNISQP--IARSREIEVADNLLPMGVYEGRWIEPAWVASRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVA

Query:  GHICIKRPWRIVWLEALAVTEGLKLLSDQSPG-VQVELDCLWVVKLLNDKEEDAT
        G+  I+    I  LE + +  GL+ ++ QS   + +E D + V++L+  ++ D T
Subjt:  GHICIKRPWRIVWLEALAVTEGLKLLSDQSPG-VQVELDCLWVVKLLNDKEEDAT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.7e-1131.16Show/hide
Query:  EWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLL-SDQSPGVQVELDCLWVVKLLNDKEEDATELWN
        +W P     WKLN + +W  +    G GWI+R   G ++ A    I+    I +LE +A+ EGL+ +  +    + +E D L  + LL+ + +D TE+  
Subjt:  EWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLL-SDQSPGVQVELDCLWVVKLLNDKEEDATELWN

Query:  FILEAKALIPSTNIESIIHVARRNNAMAHILARKASES
         + E   ++    I S+ H++R  N +AH LAR+A E+
Subjt:  FILEAKALIPSTNIESIIHVARRNNAMAHILARKASES

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.1e-1336.67Show/hide
Query:  SRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLLSDQS--PGVQVELDCLWVVKLLNDKEEDAT
        ++++W P    +W LN D SWS+   R G GWI+R  DG +V+AG+  ++    +  LEA A+ EGL+ L++      + +E D   V  LLN K ED T
Subjt:  SRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLLSDQS--PGVQVELDCLWVVKLLNDKEEDAT

Query:  ELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKAS---ESSSFVD
        +    + E   L  S  I +   V R  N  AH LA++AS   ES  +VD
Subjt:  ELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKAS---ESSSFVD

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]6.5e-1130.34Show/hide
Query:  WLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLL---------SDQSPGVQVELDCLWVVKLLNDKEE
        W P     WKLN D +W  +    G GWI+R   G ++ A    I+    I +LE +A+ EGL+ +          +    + +E D L  + LL+ + +
Subjt:  WLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLL---------SDQSPGVQVELDCLWVVKLLNDKEE

Query:  DATELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKASES
        D TE+   + E   ++    I S+ H++R  N +AH LAR+A E+
Subjt:  DATELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKASES

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134128.3e-1231.16Show/hide
Query:  EWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLL-SDQSPGVQVELDCLWVVKLLNDKEEDATELWN
        +W P     WKLN + +W  +    G GWI+R   G ++ A    I+    I +LE +A+ EGL+ +  +    + +E D L  + LL+ + +D TE+  
Subjt:  EWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLL-SDQSPGVQVELDCLWVVKLLNDKEEDATELWN

Query:  FILEAKALIPSTNIESIIHVARRNNAMAHILARKASES
         + E   ++    I S+ H++R  N +AH LAR+A E+
Subjt:  FILEAKALIPSTNIESIIHVARRNNAMAHILARKASES

A0A6J1CQG0 uncharacterized protein LOC1110132161.3e-0930.97Show/hide
Query:  GDSLDEQNL-------IKWNISQP--IARSREIEVADNLLPMGVYEGRWIEPAWVASRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVA
        G+++DEQ L       I  NI +   I+++R  +  D  LP G      +   W A            WKLN D SWSEE++  G GWI+    G +V+A
Subjt:  GDSLDEQNL-------IKWNISQP--IARSREIEVADNLLPMGVYEGRWIEPAWVASRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVA

Query:  GHICIKRPWRIVWLEALAVTEGLKLLSDQSPG-VQVELDCLWVVKLLNDKEEDAT
        G+  I+    I  LE + +  GL+ ++ QS   + +E D + V++L+  ++ D T
Subjt:  GHICIKRPWRIVWLEALAVTEGLKLLSDQSPG-VQVELDCLWVVKLLNDKEEDAT

A0A6J1DNV9 uncharacterized protein LOC1110224035.2e-1436.67Show/hide
Query:  SRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLLSDQS--PGVQVELDCLWVVKLLNDKEEDAT
        ++++W P    +W LN D SWS+   R G GWI+R  DG +V+AG+  ++    +  LEA A+ EGL+ L++      + +E D   V  LLN K ED T
Subjt:  SRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLLSDQS--PGVQVELDCLWVVKLLNDKEEDAT

Query:  ELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKAS---ESSSFVD
        +    + E   L  S  I +   V R  N  AH LA++AS   ES  +VD
Subjt:  ELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKAS---ESSSFVD

A0A6J1DSV1 uncharacterized protein LOC1110236083.1e-1130.34Show/hide
Query:  WLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLL---------SDQSPGVQVELDCLWVVKLLNDKEE
        W P     WKLN D +W  +    G GWI+R   G ++ A    I+    I +LE +A+ EGL+ +          +    + +E D L  + LL+ + +
Subjt:  WLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLL---------SDQSPGVQVELDCLWVVKLLNDKEE

Query:  DATELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKASES
        D TE+   + E   ++    I S+ H++R  N +AH LAR+A E+
Subjt:  DATELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKASES

B8AFN2 RNase H domain-containing protein7.8e-1033.79Show/hide
Query:  WVASRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLLSDQS-PGVQVELDCLWVVKLLNDKEED
        WV  +V W+       KLN D S+     + G G ++R S G+ + A    + R    +  E  A  EGL L+   +   + VE DC+ VV+LLND E D
Subjt:  WVASRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVTEGLKLLSDQS-PGVQVELDCLWVVKLLNDKEED

Query:  ATELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKASESS
         +EL N + EAK L+  T    +  + R  N+++H+LA +A   S
Subjt:  ATELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKASESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCAAGTGGTTAAGAGTGGAACCAAGTTTTCACCCCACACGCATGTGCCGCCGCCGCCGCCGGTCGGGCGGGTTCAGCCTCACGTGTCTTTGCTGATTCGTCGCCA
CGTGTCACCCGTTCGTCCGTCAGTTCAGCGCGTAAACCGTCCGTTTCGCGCCGACCGCGCCTTTCGTTCCAAGCTGACCGCGCCTGACCGCTATGATTTCTATCGCCACT
CCTGCCCCACCGCCAAGAACATTGTAAGGTCCAACGACATCTCTCCATCCACTCACACCACCCAGATATCTCCGCTTCTCTCCTCAGACTCTCTTCCACAACTTCTTCAT
TCAGATTTTGGTGTATTGCTCTGGTGTATCCAAATGGAGAATCAAAGTGATGCAGAATCTCTAACCAAACAGCTTGCTGAATTGAAGGTTACGGCTGTCTTCGGCTTTGA
CGAATGTGACGAGCATAGTGGAACACATGAAGATGAGCTTCCATACGGACCATGGTTGTGTGAACATATCAAGCTAAAGGGCAAAGATGAAGGCTCGTCTTCACTGACTG
GTCGGGGACGAGGAAGAGGGCGAGCGGGGTCTGGTGGGAGAGGGAATTGGCGAAACTACACCAGGGATATTGAGGAGGAGGATCTGAGCGAAAAAAAAAAAAACCTTTCT
ACGGAGGAAGAGTCGGCAGCTTCTCCGACGAGAAAAGAGAATATTCCAGCAACCTCCTTCAATGAGCTAACAATAGCAGCGTTAGTGACAGAAACATCGCAAAAATCAGG
AGGTCTGCATCACGAGACTTGGACTCTTCTTAGAAGACTAGGAGAACAATCCAATTTCCCCTGGATTATTGGGGGTGATTTCAATGAGATTATTAGCAATTCTGAGAAGA
ATGTGAATGGATTGAATCCCACAGTGGAAGCACGTTTGATCGCACATCTCTTCATCAATGGGTGGGAACCTCCGGACTATTGCGAAAGATGGTGGAAGTCTAGCACTGGG
GATTCATTAGACGAGCAAAATTTAATCAAATGGAATATATCTCAACCAATCGCCAGATCTAGAGAAATTGAAGTAGCAGATAACTTATTACCTATGGGAGTTTATGAAGG
AAGATGGATCGAACCTGCTTGGGTTGCATCAAGGGTCGAGTGGCTACCGATTCTAGAGGGGTTGTGGAAGTTAAATTGCGATGTGTCTTGGAGTGAGGAGAAACAGAGGG
TGGGATTTGGCTGGATTATGCGCCTGAGTGATGGGTCTTTGGTGGTAGCAGGACACATATGCATCAAAAGGCCATGGAGAATAGTTTGGCTTGAAGCTTTAGCAGTAACG
GAGGGATTGAAATTGTTGTCGGATCAATCCCCAGGTGTTCAGGTAGAGCTTGATTGCCTTTGGGTGGTTAAGCTTCTCAACGATAAAGAGGAAGACGCCACTGAGTTGTG
GAATTTCATTCTAGAAGCGAAAGCCCTAATTCCCTCAACAAATATTGAATCAATAATTCATGTGGCCAGAAGGAACAATGCTATGGCCCACATTTTGGCTAGGAAGGCTA
GTGAAAGTAGTTCATTTGTGGATATTGGTCATGTAAATCACATTAGCGGGGACCCTGTCCCACATGTTTCTCCTATGGGAGCAATTGCTCATCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCCAAGTGGTTAAGAGTGGAACCAAGTTTTCACCCCACACGCATGTGCCGCCGCCGCCGCCGGTCGGGCGGGTTCAGCCTCACGTGTCTTTGCTGATTCGTCGCCA
CGTGTCACCCGTTCGTCCGTCAGTTCAGCGCGTAAACCGTCCGTTTCGCGCCGACCGCGCCTTTCGTTCCAAGCTGACCGCGCCTGACCGCTATGATTTCTATCGCCACT
CCTGCCCCACCGCCAAGAACATTGTAAGGTCCAACGACATCTCTCCATCCACTCACACCACCCAGATATCTCCGCTTCTCTCCTCAGACTCTCTTCCACAACTTCTTCAT
TCAGATTTTGGTGTATTGCTCTGGTGTATCCAAATGGAGAATCAAAGTGATGCAGAATCTCTAACCAAACAGCTTGCTGAATTGAAGGTTACGGCTGTCTTCGGCTTTGA
CGAATGTGACGAGCATAGTGGAACACATGAAGATGAGCTTCCATACGGACCATGGTTGTGTGAACATATCAAGCTAAAGGGCAAAGATGAAGGCTCGTCTTCACTGACTG
GTCGGGGACGAGGAAGAGGGCGAGCGGGGTCTGGTGGGAGAGGGAATTGGCGAAACTACACCAGGGATATTGAGGAGGAGGATCTGAGCGAAAAAAAAAAAAACCTTTCT
ACGGAGGAAGAGTCGGCAGCTTCTCCGACGAGAAAAGAGAATATTCCAGCAACCTCCTTCAATGAGCTAACAATAGCAGCGTTAGTGACAGAAACATCGCAAAAATCAGG
AGGTCTGCATCACGAGACTTGGACTCTTCTTAGAAGACTAGGAGAACAATCCAATTTCCCCTGGATTATTGGGGGTGATTTCAATGAGATTATTAGCAATTCTGAGAAGA
ATGTGAATGGATTGAATCCCACAGTGGAAGCACGTTTGATCGCACATCTCTTCATCAATGGGTGGGAACCTCCGGACTATTGCGAAAGATGGTGGAAGTCTAGCACTGGG
GATTCATTAGACGAGCAAAATTTAATCAAATGGAATATATCTCAACCAATCGCCAGATCTAGAGAAATTGAAGTAGCAGATAACTTATTACCTATGGGAGTTTATGAAGG
AAGATGGATCGAACCTGCTTGGGTTGCATCAAGGGTCGAGTGGCTACCGATTCTAGAGGGGTTGTGGAAGTTAAATTGCGATGTGTCTTGGAGTGAGGAGAAACAGAGGG
TGGGATTTGGCTGGATTATGCGCCTGAGTGATGGGTCTTTGGTGGTAGCAGGACACATATGCATCAAAAGGCCATGGAGAATAGTTTGGCTTGAAGCTTTAGCAGTAACG
GAGGGATTGAAATTGTTGTCGGATCAATCCCCAGGTGTTCAGGTAGAGCTTGATTGCCTTTGGGTGGTTAAGCTTCTCAACGATAAAGAGGAAGACGCCACTGAGTTGTG
GAATTTCATTCTAGAAGCGAAAGCCCTAATTCCCTCAACAAATATTGAATCAATAATTCATGTGGCCAGAAGGAACAATGCTATGGCCCACATTTTGGCTAGGAAGGCTA
GTGAAAGTAGTTCATTTGTGGATATTGGTCATGTAAATCACATTAGCGGGGACCCTGTCCCACATGTTTCTCCTATGGGAGCAATTGCTCATCTCTAA
Protein sequenceShow/hide protein sequence
MTQVVKSGTKFSPHTHVPPPPPVGRVQPHVSLLIRRHVSPVRPSVQRVNRPFRADRAFRSKLTAPDRYDFYRHSCPTAKNIVRSNDISPSTHTTQISPLLSSDSLPQLLH
SDFGVLLWCIQMENQSDAESLTKQLAELKVTAVFGFDECDEHSGTHEDELPYGPWLCEHIKLKGKDEGSSSLTGRGRGRGRAGSGGRGNWRNYTRDIEEEDLSEKKKNLS
TEEESAASPTRKENIPATSFNELTIAALVTETSQKSGGLHHETWTLLRRLGEQSNFPWIIGGDFNEIISNSEKNVNGLNPTVEARLIAHLFINGWEPPDYCERWWKSSTG
DSLDEQNLIKWNISQPIARSREIEVADNLLPMGVYEGRWIEPAWVASRVEWLPILEGLWKLNCDVSWSEEKQRVGFGWIMRLSDGSLVVAGHICIKRPWRIVWLEALAVT
EGLKLLSDQSPGVQVELDCLWVVKLLNDKEEDATELWNFILEAKALIPSTNIESIIHVARRNNAMAHILARKASESSSFVDIGHVNHISGDPVPHVSPMGAIAHL