; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029253 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029253
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold12:33471335..33473678
RNA-Seq ExpressionSpg029253
SyntenySpg029253
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031677.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.1e-0639.13Show/hide
Query:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE--LSGSDPSFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF
        S ETVS+HFN VL A LRLH+ LLK L+P+TN+CTD++W+ FE  L   D ++   +    D     T         +     + DFV  +F
Subjt:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE--LSGSDPSFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF

KAF3973363.1 hypothetical protein CMV_003208 [Castanea mollissima]1.4e-0636.67Show/hide
Query:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFELSGSDPSFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF
        S E+VS++FN VL+A L L+ +L K  EPI   CTD +W+ F+++  DP        +  +  +   +I +VET+  WS  RD  V +M+
Subjt:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFELSGSDPSFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF

XP_008456821.1 PREDICTED: uncharacterized protein LOC103496660 [Cucumis melo]8.2e-0765.12Show/hide
Query:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE
        S ETVS+HFN VL A LRLH+ LLK L+P+TN+CTD++W+ FE
Subjt:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE

XP_008462938.1 PREDICTED: uncharacterized protein LOC103501200 [Cucumis melo]1.4e-0934.04Show/hide
Query:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDN--------------KWQS------------------------FELSGS-------------DP
        SSE VS+HFN VLNA LRLHE+LLK  +P+T++C  +              +W+                         ++L  +             + 
Subjt:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDN--------------KWQS------------------------FELSGS-------------DP

Query:  SFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF
        +FE  HPG+ DS+ M+  NINF+ETT V ++ RDD  NQMF
Subjt:  SFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF

XP_028090906.1 uncharacterized protein LOC114291073 isoform X1 [Camellia sinensis]1.8e-0657.78Show/hide
Query:  MWSSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE
        +WS +T+SKHFNNVL   LRLH +LLK  EPIT  CT+++W  F+
Subjt:  MWSSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE

TrEMBL top hitse value%identityAlignment
A0A1S3C5E3 uncharacterized protein LOC1034966604.0e-0765.12Show/hide
Query:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE
        S ETVS+HFN VL A LRLH+ LLK L+P+TN+CTD++W+ FE
Subjt:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE

A0A1S3CI20 uncharacterized protein LOC1035012006.6e-1034.04Show/hide
Query:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDN--------------KWQS------------------------FELSGS-------------DP
        SSE VS+HFN VLNA LRLHE+LLK  +P+T++C  +              +W+                         ++L  +             + 
Subjt:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDN--------------KWQS------------------------FELSGS-------------DP

Query:  SFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF
        +FE  HPG+ DS+ M+  NINF+ETT V ++ RDD  NQMF
Subjt:  SFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF

A0A5A7V9B2 Putative nuclease HARBI14.4e-0664.29Show/hide
Query:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSF
        S ETVS+HFN VLNA LRLHE+LLK   P+T++C+  KWQ F
Subjt:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSF

A0A5D3BXH4 Putative nuclease HARBI15.2e-0739.13Show/hide
Query:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE--LSGSDPSFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF
        S ETVS+HFN VL A LRLH+ LLK L+P+TN+CTD++W+ FE  L   D ++   +    D     T         +     + DFV  +F
Subjt:  SSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE--LSGSDPSFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMF

A0A5D3CAK2 Retrotransposon protein3.4e-0660Show/hide
Query:  MWSSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE
        M S ET+S+HFN VL A +RLHE LLK L+P+ N CTD +W+ FE
Subjt:  MWSSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCAAGCGAGACTGTGTCTAAGCACTTTAACAATGTGCTAAATGCAGACCTTAGACTTCATGAAGTACTATTGAAGACACTAGAGCCCATCACGAACACGTGCAC
CGACAACAAGTGGCAGTCGTTTGAGTTATCAGGGTCGGATCCTAGTTTTGAGGTTGCACATCCTGGCGACCCTGATTCCAATGGGATGAGCACAAACAACATCAATTTTG
TCGAGACGACTATCGTGTGGAGTAAATTGCGGGATGATTTTGTGAACCAAATGTTTCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCAAGCGAGACTGTGTCTAAGCACTTTAACAATGTGCTAAATGCAGACCTTAGACTTCATGAAGTACTATTGAAGACACTAGAGCCCATCACGAACACGTGCAC
CGACAACAAGTGGCAGTCGTTTGAGTTATCAGGGTCGGATCCTAGTTTTGAGGTTGCACATCCTGGCGACCCTGATTCCAATGGGATGAGCACAAACAACATCAATTTTG
TCGAGACGACTATCGTGTGGAGTAAATTGCGGGATGATTTTGTGAACCAAATGTTTCGCTGA
Protein sequenceShow/hide protein sequence
MWSSETVSKHFNNVLNADLRLHEVLLKTLEPITNTCTDNKWQSFELSGSDPSFEVAHPGDPDSNGMSTNNINFVETTIVWSKLRDDFVNQMFR