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Spg029413 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029413
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUbiquitin-conjugating enzyme E2
Genome locationscaffold12:35977076..35980255
RNA-Seq ExpressionSpg029413
SyntenySpg029413
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016746 - transferase activity, transferring acyl groups (molecular function)
GO:0016874 - ligase activity (molecular function)
GO:0061631 - ubiquitin conjugating enzyme activity (molecular function)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like
IPR023313 - Ubiquitin-conjugating enzyme, active site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES82754.1 ubiquitin-conjugating enzyme E2 [Medicago truncatula]1.6e-3888.3Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV   C++ ++ VLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE TARSWTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

KAF2291204.1 hypothetical protein GH714_020640 [Hevea brasiliensis]1.0e-3769.53Show/hide
Query:  CTFASRFWSKLFWVFGVLLAWFLERPRTSMCSRCRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLV
        C+  S F     W+ G +LA           S C VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLV
Subjt:  CTFASRFWSKLFWVFGVLLAWFLERPRTSMCSRCRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLV

Query:  PEIAHMYKTDRSKYEATARSWTQKYAMG
        PEIAHMYK DR+KYEATARSWTQKYAMG
Subjt:  PEIAHMYKTDRSKYEATARSWTQKYAMG

KOM55725.1 hypothetical protein LR48_Vigan10g161700 [Vigna angularis]7.8e-3883.5Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVT------LCIYGIY---MVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKY
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV+T      L  YG      VLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE TARSWTQKY
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVT------LCIYGIY---MVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKY

Query:  AMG
        AMG
Subjt:  AMG

XP_012091025.1 ubiquitin-conjugating enzyme E2-17 kDa isoform X1 [Jatropha curcas]7.8e-3868.7Show/hide
Query:  LILCTFASRFWSKLFWVFGVLLAWFLERPRTSMCSRCRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDD
        LI+CT      S + W+ G        +   S C   +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDD
Subjt:  LILCTFASRFWSKLFWVFGVLLAWFLERPRTSMCSRCRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDD

Query:  PLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        PLVPEIAHMYKTDR+KYEATARSWTQKYAMG
Subjt:  PLVPEIAHMYKTDRSKYEATARSWTQKYAMG

XP_027353296.1 ubiquitin-conjugating enzyme E2-17 kDa-like isoform X2 [Abrus precatorius]1.0e-3788.3Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV   C   ++ VLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE TARSWTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

TrEMBL top hitse value%identityAlignment
A0A0B2QXH0 Ubiquitin-conjugating enzyme E2-17 kDa8.5e-3886.32Show/hide
Query:  CRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        C+VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYEATARSWTQKYAMG
Subjt:  CRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

A0A0L9VKZ4 UBC core domain-containing protein3.8e-3883.5Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVT------LCIYGIY---MVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKY
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV+T      L  YG      VLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE TARSWTQKY
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVT------LCIYGIY---MVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKY

Query:  AMG
        AMG
Subjt:  AMG

A0A5A7TH72 Ubiquitin-conjugating enzyme E2-17 kDa8.5e-3888.3Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV          VLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

A0A6A6KRQ2 UBC core domain-containing protein5.0e-3869.53Show/hide
Query:  CTFASRFWSKLFWVFGVLLAWFLERPRTSMCSRCRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLV
        C+  S F     W+ G +LA           S C VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLV
Subjt:  CTFASRFWSKLFWVFGVLLAWFLERPRTSMCSRCRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLV

Query:  PEIAHMYKTDRSKYEATARSWTQKYAMG
        PEIAHMYK DR+KYEATARSWTQKYAMG
Subjt:  PEIAHMYKTDRSKYEATARSWTQKYAMG

G7L403 Ubiquitin-conjugating enzyme E27.7e-3988.3Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV   C++ ++ VLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE TARSWTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

SwissProt top hitse value%identityAlignment
P35131 Ubiquitin-conjugating enzyme E2 84.3e-3985.11Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYEATAR+WTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

P35133 Ubiquitin-conjugating enzyme E2 109.6e-3984.04Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTD++KYE+TARSWTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

P35134 Ubiquitin-conjugating enzyme E2 112.1e-3882.98Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +V+F+TKV+HPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE+TARSWTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

P35135 Ubiquitin-conjugating enzyme E2-17 kDa5.6e-3985.11Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE TARSWTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

Q94F47 Ubiquitin-conjugating enzyme E2 285.6e-3984.04Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPN+NSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE+TARSWTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

Arabidopsis top hitse value%identityAlignment
AT1G64230.1 ubiquitin-conjugating enzyme 284.0e-4084.04Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPN+NSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE+TARSWTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

AT5G41700.1 ubiquitin conjugating enzyme 83.1e-4085.11Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYEATAR+WTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

AT5G41700.2 ubiquitin conjugating enzyme 83.1e-4085.11Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYEATAR+WTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

AT5G41700.4 ubiquitin conjugating enzyme 83.1e-4085.11Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYEATAR+WTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG

AT5G41700.5 ubiquitin conjugating enzyme 83.1e-4085.11Show/hide
Query:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG
        +VAFRTKVFHPNINSNGSICLDILKEQWSPALTISK           VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYEATAR+WTQKYAMG
Subjt:  RVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGCAAGATCACCTTCTGATCCTCTGCACCTTTGCCTCTCGATTTTGGAGTAAACTGTTTTGGGTGTTTGGCGTCTTGTTGGCGTGGTTTCTAGAACGCCCAAG
GACTTCCATGTGCAGCCGATGTAGAGTTGCATTCAGAACAAAGGTCTTCCATCCCAATATCAACAGCAACGGTAGCATATGCCTTGACATACTTAAGGAACAGTGGAGTC
CTGCACTAACCATTTCTAAGGTTGTCACTCTTTGCATATACGGGATTTATATGGTGTTACTTTCGATCTGTTCGCTGCTAACAGACCCGAATCCCGATGACCCGTTGGTG
CCAGAGATTGCGCACATGTACAAGACTGACAGAAGCAAGTACGAGGCAACCGCAAGAAGCTGGACCCAGAAGTATGCTATGGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGCAAGATCACCTTCTGATCCTCTGCACCTTTGCCTCTCGATTTTGGAGTAAACTGTTTTGGGTGTTTGGCGTCTTGTTGGCGTGGTTTCTAGAACGCCCAAG
GACTTCCATGTGCAGCCGATGTAGAGTTGCATTCAGAACAAAGGTCTTCCATCCCAATATCAACAGCAACGGTAGCATATGCCTTGACATACTTAAGGAACAGTGGAGTC
CTGCACTAACCATTTCTAAGGTTGTCACTCTTTGCATATACGGGATTTATATGGTGTTACTTTCGATCTGTTCGCTGCTAACAGACCCGAATCCCGATGACCCGTTGGTG
CCAGAGATTGCGCACATGTACAAGACTGACAGAAGCAAGTACGAGGCAACCGCAAGAAGCTGGACCCAGAAGTATGCTATGGGTTAG
Protein sequenceShow/hide protein sequence
MEMQDHLLILCTFASRFWSKLFWVFGVLLAWFLERPRTSMCSRCRVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVVTLCIYGIYMVLLSICSLLTDPNPDDPLV
PEIAHMYKTDRSKYEATARSWTQKYAMG