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Spg029461 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029461
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S ribosomal protein L11
Genome locationscaffold12:34445309..34447973
RNA-Seq ExpressionSpg029461
SyntenySpg029461
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000911 - Ribosomal protein L11/L12
IPR020783 - Ribosomal protein L11, C-terminal
IPR020785 - Ribosomal protein L11, conserved site
IPR036769 - Ribosomal protein L11, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579598.1 50S ribosomal protein L11, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2694.2Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDP+A+KVGKITIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPKKKELV
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

KAG6688118.1 hypothetical protein I3842_11G108400 [Carya illinoinensis]1.6e-2694.2Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDPK EKVGKITIEQ+RTIAAEKLPDLNCT+IESAMRIIAGTAANMGIE+DPPVLEPKKKELV
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

XP_022155580.1 50S ribosomal protein L11, chloroplastic [Momordica charantia]5.6e-2797.1Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDP+AEKVGKITIEQLR IAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

XP_022929065.1 50S ribosomal protein L11, chloroplastic [Cucurbita moschata]1.6e-2694.2Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDP+A+KVGKITIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPKKKELV
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

XP_022970097.1 50S ribosomal protein L11, chloroplastic [Cucurbita maxima]1.6e-2694.2Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDP+A+KVGKITIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPKKKELV
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

TrEMBL top hitse value%identityAlignment
A0A6A3C2E8 50S ribosomal protein L111.0e-2673.56Show/hide
Query:  IVFLEEFNGQKVDNCCHVGVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        + F +++N +  D     G+EKGSKDPK EKVGKITI+QLRTIA EKLPDLNCTTIESAMRIIAGTAANMGI++DPPVLEPKKKE++
Subjt:  IVFLEEFNGQKVDNCCHVGVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

A0A6J1DMT9 50S ribosomal protein L11, chloroplastic2.7e-2797.1Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDP+AEKVGKITIEQLR IAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

A0A6J1ET69 50S ribosomal protein L11, chloroplastic7.8e-2794.2Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDP+A+KVGKITIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPKKKELV
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

A0A6J1HY65 50S ribosomal protein L11, chloroplastic7.8e-2794.2Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDP+A+KVGKITIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPKKKELV
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

A0A6P4AY04 50S ribosomal protein L11, chloroplastic2.3e-2691.3Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDPK EKVGK+TIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPKKKE++
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

SwissProt top hitse value%identityAlignment
B9KYX3 50S ribosomal protein L115.3e-1260.71Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEV
        G+EKG+ DPK +KVG++T EQ+R IA  K+PDLN   +E+AMR+I GTA +MGIEV
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEV

C0QQL2 50S ribosomal protein L118.1e-1364.91Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVD
        G++KG+ DPK EKVGK+T EQ+R IA  K+ DLN   IE+AMRIIAGTA +MGIEV+
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVD

P31164 50S ribosomal protein L11, chloroplastic5.4e-2581.16Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        G EKGSKDP+ EKVGKITI+QLR IA EKLPDLNCTTIESAMRIIAGTAANMGI++DPP+L  KKKE++
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

Q9KFR8 50S ribosomal protein L11-21.4e-1262.71Show/hide
Query:  HVGVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVD
        + GVEKG+  P  E VG IT +QLRTIA  KLPDLN T+I+ AM+IIAGTA NMGI ++
Subjt:  HVGVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVD

Q9MAP3 50S ribosomal protein L11, chloroplastic2.2e-2684.06Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDP+ +KVG ITI+QLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGI++DPP+LEPKKK ++
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

Arabidopsis top hitse value%identityAlignment
AT1G32990.1 plastid ribosomal protein l111.6e-2784.06Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV
        GVEKGSKDP+ +KVG ITI+QLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGI++DPP+LEPKKK ++
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

AT5G51610.1 Ribosomal protein L11 family protein3.7e-2172.73Show/hide
Query:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKK
        GV+KGSKDPK  KVG ITI+Q+R IA  KLP+LNCTTI S MR IAGTA NMGI++DPP+LEPK K
Subjt:  GVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGAGGTCTTCCTCCGCCATCCGACAGGTAATGCAACAAAAAGGCTCAATCAAGCAAGTGATCTTTCTGGAGAGCCGATCAGGCCCGAGCCAATCAAGCAAGGTAC
CTATCCTTATTCATTGGAACATAACTTTGAGATTCAGCCTATGGAGGAATGGGCACTTGCAATTGCAACAGTAACAGGAGGAATGTTTGTAGTGAAGATAGTGGCAACTG
GTATTGTATTTCTGGAGGAATTCAATGGTCAGAAGGTTGATAATTGCTGTCATGTAGGAGTTGAAAAAGGATCAAAGGATCCAAAGGCAGAGAAAGTGGGAAAGATAACC
ATTGAACAGTTGCGTACGATTGCTGCTGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATTGCAGGTACGGCAGCCAATATGGGAATTGA
GGTTGACCCTCCTGTCCTTGAACCTAAAAAGAAGGAACTTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCGAGGTCTTCCTCCGCCATCCGACAGGTAATGCAACAAAAAGGCTCAATCAAGCAAGTGATCTTTCTGGAGAGCCGATCAGGCCCGAGCCAATCAAGCAAGGTAC
CTATCCTTATTCATTGGAACATAACTTTGAGATTCAGCCTATGGAGGAATGGGCACTTGCAATTGCAACAGTAACAGGAGGAATGTTTGTAGTGAAGATAGTGGCAACTG
GTATTGTATTTCTGGAGGAATTCAATGGTCAGAAGGTTGATAATTGCTGTCATGTAGGAGTTGAAAAAGGATCAAAGGATCCAAAGGCAGAGAAAGTGGGAAAGATAACC
ATTGAACAGTTGCGTACGATTGCTGCTGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATTGCAGGTACGGCAGCCAATATGGGAATTGA
GGTTGACCCTCCTGTCCTTGAACCTAAAAAGAAGGAACTTGTGTAG
Protein sequenceShow/hide protein sequence
MVEVFLRHPTGNATKRLNQASDLSGEPIRPEPIKQGTYPYSLEHNFEIQPMEEWALAIATVTGGMFVVKIVATGIVFLEEFNGQKVDNCCHVGVEKGSKDPKAEKVGKIT
IEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV