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Spg029499 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029499
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold2:16057156..16058906
RNA-Seq ExpressionSpg029499
SyntenySpg029499
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.2e-1074.51Show/hide
Query:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PR NR  L T +L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV++
Subjt:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]3.5e-1038.65Show/hide
Query:  HHFPSKFSEHLRERVKEEEEEEFRGFEDFRAKQEYLWTGVYKLNQKLYLVWRKIKGSRKPRICLVCVRDVSGPIGLESRFHFFRPRENRLGLQTRELAKT
        HHF SK SE+ +ERVK EEEEEFRG    + K+      +  L   + L W  +                   IGL       RPR NR  LQT +L KT
Subjt:  HHFPSKFSEHLRERVKEEEEEEFRGFEDFRAKQEYLWTGVYKLNQKLYLVWRKIKGSRKPRICLVCVRDVSGPIGLESRFHFFRPRENRLGLQTRELAKT

Query:  ----------------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
                                    VEIELP+PDTLPT AES  S+SSTW+ELY ESV++
Subjt:  ----------------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]5.9e-1070.59Show/hide
Query:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PR NR  LQ  +L KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESV++
Subjt:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]4.5e-1050Show/hide
Query:  VYKLNQKLYLVWRKIKGSRKPRICLVCVRDVSGPIGLESRFHFFRPRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        V+K +QKLYLVW                                 PR NR  LQTREL KT  IELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  VYKLNQKLYLVWRKIKGSRKPRICLVCVRDVSGPIGLESRFHFFRPRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]4.5e-1074.51Show/hide
Query:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PR NR   QT +L KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein5.8e-1174.51Show/hide
Query:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PR NR  L T +L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV++
Subjt:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5A7UGD0 Uncharacterized protein1.7e-1038.65Show/hide
Query:  HHFPSKFSEHLRERVKEEEEEEFRGFEDFRAKQEYLWTGVYKLNQKLYLVWRKIKGSRKPRICLVCVRDVSGPIGLESRFHFFRPRENRLGLQTRELAKT
        HHF SK SE+ +ERVK EEEEEFRG    + K+      +  L   + L W  +                   IGL       RPR NR  LQT +L KT
Subjt:  HHFPSKFSEHLRERVKEEEEEEFRGFEDFRAKQEYLWTGVYKLNQKLYLVWRKIKGSRKPRICLVCVRDVSGPIGLESRFHFFRPRENRLGLQTRELAKT

Query:  ----------------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
                                    VEIELP+PDTLPT AES  S+SSTW+ELY ESV++
Subjt:  ----------------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5A7V2F2 Uncharacterized protein2.9e-1070.59Show/hide
Query:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PR NR  LQ  +L KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESV++
Subjt:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5D3BET3 Uncharacterized protein2.2e-1074.51Show/hide
Query:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PR NR   QT +L KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  PRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5D3DWP3 Uncharacterized protein2.2e-1050Show/hide
Query:  VYKLNQKLYLVWRKIKGSRKPRICLVCVRDVSGPIGLESRFHFFRPRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        V+K +QKLYLVW                                 PR NR  LQTREL KT  IELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  VYKLNQKLYLVWRKIKGSRKPRICLVCVRDVSGPIGLESRFHFFRPRENRLGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACTCTTACCCATTTTCAGCCAACTTCCAGCCACATTCCTCATCATTTTCCTTCCAAATTTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGA
ATTTCGTGGTTTTGAGGATTTTCGAGCAAAGCAGGAGTATCTCTGGACTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGAGGAAGATAAAGGGTAGCAGAA
AACCTCGAATCTGTCTTGTCTGTGTTCGGGACGTTTCTGGGCCAATTGGTTTAGAATCTCGTTTTCATTTCTTCAGGCCAAGAGAAAATAGGTTGGGTCTACAAACCAGG
GAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTC
CGTCTATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAACTCTTACCCATTTTCAGCCAACTTCCAGCCACATTCCTCATCATTTTCCTTCCAAATTTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGA
ATTTCGTGGTTTTGAGGATTTTCGAGCAAAGCAGGAGTATCTCTGGACTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGAGGAAGATAAAGGGTAGCAGAA
AACCTCGAATCTGTCTTGTCTGTGTTCGGGACGTTTCTGGGCCAATTGGTTTAGAATCTCGTTTTCATTTCTTCAGGCCAAGAGAAAATAGGTTGGGTCTACAAACCAGG
GAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTC
CGTCTATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MPTLTHFQPTSSHIPHHFPSKFSEHLRERVKEEEEEEFRGFEDFRAKQEYLWTGVYKLNQKLYLVWRKIKGSRKPRICLVCVRDVSGPIGLESRFHFFRPRENRLGLQTR
ELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVL