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Spg029510 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029510
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:19805263..19808700
RNA-Seq ExpressionSpg029510
SyntenySpg029510
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025985.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-0558.62Show/hide
Query:  KVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRNNLAGGLGGV
        +V+IELPVPDTLPTSAESS S+S S         +  DDV WLHA+FR   AGG GG+
Subjt:  KVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRNNLAGGLGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.7e-0660Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRNNLAGGLGGVLGF
        VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR   AGG GG + F
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRNNLAGGLGGVLGF

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-0651.28Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRNNLAGGLGGVLGFEPLTLRNQ
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR   AGG GG +   P + R +
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRNNLAGGLGGVLGFEPLTLRNQ

TYJ98643.1 hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa]1.4e-0582.14Show/hide
Query:  MQTHCIGYPHPHVSYMDALDHCICIEYK
        MQTHCIGYPH HV+YMDALD C+CI+YK
Subjt:  MQTHCIGYPHPHVSYMDALDHCICIEYK

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-0651.28Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRNNLAGGLGGVLGFEPLTLRNQ
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR   AGG GG +   P + R +
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRNNLAGGLGGVLGFEPLTLRNQ

TrEMBL top hitse value%identityAlignment
A0A5A7SNE5 Reverse transcriptase5.1e-0658.62Show/hide
Query:  KVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRNNLAGGLGGV
        +V+IELPVPDTLPTSAESS S+S S         +  DDV WLHA+FR   AGG GG+
Subjt:  KVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRNNLAGGLGGV

A0A5A7U1U5 Uncharacterized protein6.6e-0682.14Show/hide
Query:  MQTHCIGYPHPHVSYMDALDHCICIEYK
        MQTHCIGYPH HV+YMDALD C+CI+YK
Subjt:  MQTHCIGYPHPHVSYMDALDHCICIEYK

A0A5A7VMG9 Reverse transcriptase7.8e-0751.28Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRNNLAGGLGGVLGFEPLTLRNQ
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR   AGG GG +   P + R +
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRNNLAGGLGGVLGFEPLTLRNQ

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.3e-0660Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRNNLAGGLGGVLGF
        VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR   AGG GG + F
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRNNLAGGLGGVLGF

A0A5D3DX39 Reverse transcriptase7.8e-0751.28Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRNNLAGGLGGVLGFEPLTLRNQ
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR   AGG GG +   P + R +
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRNNLAGGLGGVLGFEPLTLRNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCATTGCATAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTAGAGATCGAGCTCCCGGTGCCTGA
TACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCT
TCCGGAATAACCTAGCAGGTGGTCTGGGAGGGGTTTTGGGGTTCGAACCTTTGACTCTTCGGAATCAGACTTCAGGCTCGTTACGATCCTCATGGCCTTCTCGCCTCCTC
GAGATCCAAGGAACTCAAGTAATACAAGAAAAGATTAATTCCCTTGATCAGCTTGCAATTGATGGTCTTCTTGATGGTCTCAAATTTCTCTCCTCTATTCGGCTCCCAAA
GGTGGAAGTAAACTTTCCAAGAGTGGAATGTTCCTCCCAAGGATGGAACTATGGAATGTATTTGACTTGGGCGGCTATCTCCTTTTATAGAGTTGAGGAAGGCTTGAATT
AG
mRNA sequenceShow/hide mRNA sequence
ATGCAAACTCATTGCATAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTAGAGATCGAGCTCCCGGTGCCTGA
TACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCT
TCCGGAATAACCTAGCAGGTGGTCTGGGAGGGGTTTTGGGGTTCGAACCTTTGACTCTTCGGAATCAGACTTCAGGCTCGTTACGATCCTCATGGCCTTCTCGCCTCCTC
GAGATCCAAGGAACTCAAGTAATACAAGAAAAGATTAATTCCCTTGATCAGCTTGCAATTGATGGTCTTCTTGATGGTCTCAAATTTCTCTCCTCTATTCGGCTCCCAAA
GGTGGAAGTAAACTTTCCAAGAGTGGAATGTTCCTCCCAAGGATGGAACTATGGAATGTATTTGACTTGGGCGGCTATCTCCTTTTATAGAGTTGAGGAAGGCTTGAATT
AG
Protein sequenceShow/hide protein sequence
MQTHCIGYPHPHVSYMDALDHCICIEYKVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRNNLAGGLGGVLGFEPLTLRNQTSGSLRSSWPSRLL
EIQGTQVIQEKINSLDQLAIDGLLDGLKFLSSIRLPKVEVNFPRVECSSQGWNYGMYLTWAAISFYRVEEGLN