; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029511 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029511
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold2:22476054..22480758
RNA-Seq ExpressionSpg029511
SyntenySpg029511
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]8.5e-2734.31Show/hide
Query:  WFEMAESASASKKEKHVWTPDEDAVL-----------GHPQAKG-LRNQPFPWFNELALIFG----------KDNARGARARTPIEITPEPEPVIDLDED
        W  MA  +  SK  KH WT  ED VL           G     G  + +    +  +A + G          +  A G R +TP+EI  +     + ++D
Subjt:  WFEMAESASASKKEKHVWTPDEDAVL-----------GHPQAKG-LRNQPFPWFNELALIFG----------KDNARGARARTPIEITPEPEPVIDLDED

Query:  MNVDYEDCYVPSPPVIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSME
        M+++ ED  +P+P  ++P  GE+   TPT     AG  R   KRR   G++ +      + T+++I KIA W  ++ ++E S  K LY ELQ+IPG+ ++
Subjt:  MNVDYEDCYVPSPPVIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSME

Query:  DGLVVARALLSDERMLTHFMDFPPEWKFDYCMEILGRAP
        D L+VA +LL D  ML  F+D+P EWK+  CM ILGR P
Subjt:  DGLVVARALLSDERMLTHFMDFPPEWKFDYCMEILGRAP

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-2835.89Show/hide
Query:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP
        AC+  R+ W E  +   A K     W      V GHP A+GL N+ FP+F +L ++FG+D A G R +TPIE+  +     + ++DM+++ ED  +P+P 
Subjt:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP

Query:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER
         ++P  GE+   TPT      G S+   KRR    ++ +      + T+++I KIA W  ++ ++E S  K LY ELQ+IPG+ ++D L+V  +LL D  
Subjt:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER

Query:  MLTHFMDFP
        ML  F+D+P
Subjt:  MLTHFMDFP

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]3.1e-3731.38Show/hide
Query:  QTVSWHFNAVLDAVLQLHPVLLKAPEPVTNACTDD--------------RWKW-----------------FEMAESASA--------SKKEKHVWTPDED
        +TVS HFNAVL+AVL+LH +LLK P+PVT++C  D              R+++                  +M + +S         SK  KH WT  ED
Subjt:  QTVSWHFNAVLDAVLQLHPVLLKAPEPVTNACTDD--------------RWKW-----------------FEMAESASA--------SKKEKHVWTPDED

Query:  AVL---------------------------------------------------------------GHPQAKGLRNQPFPWFNELALIFGKDNARGARAR
         VL                                                               GHP A+GL N+PFP+F +L ++FG+D A G R +
Subjt:  AVL---------------------------------------------------------------GHPQAKGLRNQPFPWFNELALIFGKDNARGARAR

Query:  TPIEITPEPEPVIDLDEDMNVDYEDCYVPSPPVIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERS
        TP+E++ +     + ++DM+++ ED  +P+P  ++P  GE+   TPT  T  AG SR   KRR   G++ +      + T+++I KIA W  ++ ++E S
Subjt:  TPIEITPEPEPVIDLDEDMNVDYEDCYVPSPPVIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERS

Query:  RPKELYVELQSIPGVSMEDGLVVARALLSDERMLTHFMDFP
          K LY ELQ+IPG+ ++D L+VA +LL D  ML  F+D+P
Subjt:  RPKELYVELQSIPGVSMEDGLVVARALLSDERMLTHFMDFP

TYK10886.1 retrotransposon protein [Cucumis melo var. makuwa]5.0e-2734.93Show/hide
Query:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP
        AC+  R+ W E  +   A K     W      V GHP A+GL N+ FP+F +L ++FG+D A G R +TP+E+  +     + ++DM+++ ED  +P+P 
Subjt:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP

Query:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER
         ++P  GE+   TPT      G SR   KRR    ++ +      + T+++I KI  W  ++ ++E S  K LY ELQ+IPG+ ++D L+V  +LL D  
Subjt:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER

Query:  MLTHFMDFP
        ML  F+++P
Subjt:  MLTHFMDFP

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]2.0e-2835.89Show/hide
Query:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP
        AC+  R+ W E  +   A K     W      V GHP A+GL N+ FP+F +L ++FG+D A G R +TPIE+  +     + ++DM+++ ED  +P+P 
Subjt:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP

Query:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER
         ++P  GE+   TPT      G S+   KRR    ++ +      + T+++I KIA W  ++ ++E S  K LY ELQ+IPG+ ++D L+V  +LL D  
Subjt:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER

Query:  MLTHFMDFP
        ML  F+D+P
Subjt:  MLTHFMDFP

TrEMBL top hitse value%identityAlignment
A0A1S3CC17 uncharacterized protein LOC1034992489.8e-2935.89Show/hide
Query:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP
        AC+  R+ W E  +   A K     W      V GHP A+GL N+ FP+F +L ++FG+D A G R +TPIE+  +     + ++DM+++ ED  +P+P 
Subjt:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP

Query:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER
         ++P  GE+   TPT      G S+   KRR    ++ +      + T+++I KIA W  ++ ++E S  K LY ELQ+IPG+ ++D L+V  +LL D  
Subjt:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER

Query:  MLTHFMDFP
        ML  F+D+P
Subjt:  MLTHFMDFP

A0A5A7VG45 Retrotransposon protein4.1e-2734.31Show/hide
Query:  WFEMAESASASKKEKHVWTPDEDAVL-----------GHPQAKG-LRNQPFPWFNELALIFG----------KDNARGARARTPIEITPEPEPVIDLDED
        W  MA  +  SK  KH WT  ED VL           G     G  + +    +  +A + G          +  A G R +TP+EI  +     + ++D
Subjt:  WFEMAESASASKKEKHVWTPDEDAVL-----------GHPQAKG-LRNQPFPWFNELALIFG----------KDNARGARARTPIEITPEPEPVIDLDED

Query:  MNVDYEDCYVPSPPVIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSME
        M+++ ED  +P+P  ++P  GE+   TPT     AG  R   KRR   G++ +      + T+++I KIA W  ++ ++E S  K LY ELQ+IPG+ ++
Subjt:  MNVDYEDCYVPSPPVIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSME

Query:  DGLVVARALLSDERMLTHFMDFPPEWKFDYCMEILGRAP
        D L+VA +LL D  ML  F+D+P EWK+  CM ILGR P
Subjt:  DGLVVARALLSDERMLTHFMDFPPEWKFDYCMEILGRAP

A0A5A7VGQ0 Retrotransposon protein9.8e-2935.89Show/hide
Query:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP
        AC+  R+ W E  +   A K     W      V GHP A+GL N+ FP+F +L ++FG+D A G R +TPIE+  +     + ++DM+++ ED  +P+P 
Subjt:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP

Query:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER
         ++P  GE+   TPT      G S+   KRR    ++ +      + T+++I KIA W  ++ ++E S  K LY ELQ+IPG+ ++D L+V  +LL D  
Subjt:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER

Query:  MLTHFMDFP
        ML  F+D+P
Subjt:  MLTHFMDFP

A0A5D3C7T4 Uncharacterized protein1.5e-3731.38Show/hide
Query:  QTVSWHFNAVLDAVLQLHPVLLKAPEPVTNACTDD--------------RWKW-----------------FEMAESASA--------SKKEKHVWTPDED
        +TVS HFNAVL+AVL+LH +LLK P+PVT++C  D              R+++                  +M + +S         SK  KH WT  ED
Subjt:  QTVSWHFNAVLDAVLQLHPVLLKAPEPVTNACTDD--------------RWKW-----------------FEMAESASA--------SKKEKHVWTPDED

Query:  AVL---------------------------------------------------------------GHPQAKGLRNQPFPWFNELALIFGKDNARGARAR
         VL                                                               GHP A+GL N+PFP+F +L ++FG+D A G R +
Subjt:  AVL---------------------------------------------------------------GHPQAKGLRNQPFPWFNELALIFGKDNARGARAR

Query:  TPIEITPEPEPVIDLDEDMNVDYEDCYVPSPPVIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERS
        TP+E++ +     + ++DM+++ ED  +P+P  ++P  GE+   TPT  T  AG SR   KRR   G++ +      + T+++I KIA W  ++ ++E S
Subjt:  TPIEITPEPEPVIDLDEDMNVDYEDCYVPSPPVIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERS

Query:  RPKELYVELQSIPGVSMEDGLVVARALLSDERMLTHFMDFP
          K LY ELQ+IPG+ ++D L+VA +LL D  ML  F+D+P
Subjt:  RPKELYVELQSIPGVSMEDGLVVARALLSDERMLTHFMDFP

A0A5D3CKC1 Retrotransposon protein2.4e-2734.93Show/hide
Query:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP
        AC+  R+ W E  +   A K     W      V GHP A+GL N+ FP+F +L ++FG+D A G R +TP+E+  +     + ++DM+++ ED  +P+P 
Subjt:  ACTDDRWKWFEMAESASASKKEKHVWTPDEDAVLGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPP

Query:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER
         ++P  GE+   TPT      G SR   KRR    ++ +      + T+++I KI  W  ++ ++E S  K LY ELQ+IPG+ ++D L+V  +LL D  
Subjt:  VIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDER

Query:  MLTHFMDFP
        ML  F+++P
Subjt:  MLTHFMDFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGGGAACACCACGTTTGGGAGGCCTGGAATGAGATGGGTTTGGAATGGGCTGGATTCGAATGGAGTTTCGCCCTCCACCTCTCAAATCTGAGGTATTTTCGTTG
TTTTCAAATTCTTTCGGCGGATCTGTTTCGGTGGCGGTGTATTCCCTCTTCTTCGCTCGGATCTAAGATGCTGTCGGCGAGACACCCTCGTCGTTTGGCTTCGACGATCT
GGCCATTGCTGCTTCGTTATCCCCCTTCCTCTCTTTTGCCACCTCGAAGATGGAGGATTGTCCCCCTTGTCGCTTCGAATCTCCTTTCGTCTTTTCGCCGCCTCGAAGAT
GGAGGACTATTTTCCATGGTGGCTGGGGCTCGCGTTTTCATTCTCAGATGCTACACAATCCGTCCACCATTCGACGAGGCCCGGCAGGAGACTAGTTCAGGGATGAGAAG
CTTGGTAGGGAGGCCGAAACGAGTGAAAAAACAGACCGTATCCTGGCACTTCAATGCCGTATTGGATGCGGTACTTCAATTGCACCCAGTCCTATTGAAAGCACCTGAAC
CAGTTACCAATGCGTGTACGGACGATAGGTGGAAGTGGTTTGAGATGGCCGAGTCTGCCTCAGCTTCAAAGAAAGAGAAACACGTCTGGACGCCGGACGAAGACGCAGTG
CTAGGACATCCACAGGCCAAGGGCCTCCGTAACCAGCCATTCCCATGGTTCAATGAGTTGGCGCTCATTTTCGGGAAGGACAACGCTAGAGGAGCGAGAGCCCGAACCCC
AATTGAGATAACACCTGAACCAGAGCCGGTAATCGATCTTGATGAAGACATGAACGTGGATTATGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACCCTTG
GAGAAGAATTCTATGGGACACCGACTGGTAGGACGGGTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGACTATCCATTGGGAACGTGGCAGAGGTACTGGAGAAT
GGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGATCTCGAGAGGAGTCGGCCAAAGGAGTTATATGTGGAGCTACAGTCCAT
TCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCCCTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACT
GTATGGAGATCCTCGGTAGGGCACCGAGACAGCCCCCGCAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGGGAACACCACGTTTGGGAGGCCTGGAATGAGATGGGTTTGGAATGGGCTGGATTCGAATGGAGTTTCGCCCTCCACCTCTCAAATCTGAGGTATTTTCGTTG
TTTTCAAATTCTTTCGGCGGATCTGTTTCGGTGGCGGTGTATTCCCTCTTCTTCGCTCGGATCTAAGATGCTGTCGGCGAGACACCCTCGTCGTTTGGCTTCGACGATCT
GGCCATTGCTGCTTCGTTATCCCCCTTCCTCTCTTTTGCCACCTCGAAGATGGAGGATTGTCCCCCTTGTCGCTTCGAATCTCCTTTCGTCTTTTCGCCGCCTCGAAGAT
GGAGGACTATTTTCCATGGTGGCTGGGGCTCGCGTTTTCATTCTCAGATGCTACACAATCCGTCCACCATTCGACGAGGCCCGGCAGGAGACTAGTTCAGGGATGAGAAG
CTTGGTAGGGAGGCCGAAACGAGTGAAAAAACAGACCGTATCCTGGCACTTCAATGCCGTATTGGATGCGGTACTTCAATTGCACCCAGTCCTATTGAAAGCACCTGAAC
CAGTTACCAATGCGTGTACGGACGATAGGTGGAAGTGGTTTGAGATGGCCGAGTCTGCCTCAGCTTCAAAGAAAGAGAAACACGTCTGGACGCCGGACGAAGACGCAGTG
CTAGGACATCCACAGGCCAAGGGCCTCCGTAACCAGCCATTCCCATGGTTCAATGAGTTGGCGCTCATTTTCGGGAAGGACAACGCTAGAGGAGCGAGAGCCCGAACCCC
AATTGAGATAACACCTGAACCAGAGCCGGTAATCGATCTTGATGAAGACATGAACGTGGATTATGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACCCTTG
GAGAAGAATTCTATGGGACACCGACTGGTAGGACGGGTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGACTATCCATTGGGAACGTGGCAGAGGTACTGGAGAAT
GGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGATCTCGAGAGGAGTCGGCCAAAGGAGTTATATGTGGAGCTACAGTCCAT
TCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCCCTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACT
GTATGGAGATCCTCGGTAGGGCACCGAGACAGCCCCCGCAACCATGA
Protein sequenceShow/hide protein sequence
MEREHHVWEAWNEMGLEWAGFEWSFALHLSNLRYFRCFQILSADLFRWRCIPSSSLGSKMLSARHPRRLASTIWPLLLRYPPSSLLPPRRWRIVPLVASNLLSSFRRLED
GGLFSMVAGARVFILRCYTIRPPFDEARQETSSGMRSLVGRPKRVKKQTVSWHFNAVLDAVLQLHPVLLKAPEPVTNACTDDRWKWFEMAESASASKKEKHVWTPDEDAV
LGHPQAKGLRNQPFPWFNELALIFGKDNARGARARTPIEITPEPEPVIDLDEDMNVDYEDCYVPSPPVIDPTLGEEFYGTPTGRTGGAGPSRAVHKRRLSIGNVAEVLEN
GFQMTAQQIEKIALWPTKRDDLERSRPKELYVELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYCMEILGRAPRQPPQP