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Spg029512 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029512
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:22180589..22184117
RNA-Seq ExpressionSpg029512
SyntenySpg029512
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]1.6e-2232.67Show/hide
Query:  LESTDHSLFDCNRAREIWKHTINRVFLEE-NFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEP
        +E T H +  C RA++IW      +F    N N S  D WL +    + ++ +L A   WAIW D+N  AH + +     +  WI  Y   Y +A   + 
Subjt:  LESTDHSLFDCNRAREIWKHTINRVFLEE-NFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEP

Query:  CPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAIN
             S    P  R   W+PP D+  K+N+DA+ +  ST +G I RD  G +  A + F  +  +   AE++  +E ++LA S     L+VESDC EAI 
Subjt:  CPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAIN

Query:  LI
        L+
Subjt:  LI

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.3e-1631.65Show/hide
Query:  LESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPC
        +E+TDH+LF C RA+E+W   + + F + +FN S  D  L +  S S  +F+L+    WAIWND+N +    +IP    ++ WI  Y+  ++  ++    
Subjt:  LESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPC

Query:  PNSSSDCAVPKSR--DEHWVPPPDNFWKLNTDASWKQN---STVGAIFRDSVGQIRGA
             + A    R  + +W PPP  + K+N DA+ K++   + +G + R+  GQI  A
Subjt:  PNSSSDCAVPKSR--DEHWVPPPDNFWKLNTDASWKQN---STVGAIFRDSVGQIRGA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]9.0e-1830Show/hide
Query:  ESTDHSLFDCNRAREIWKHTIN-RVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPC
        ES  H+ F C RAR+IW+        L    N S  + W  +      ++  L A   W IWND+N + H  ++  V  K +W+  +LD + +A +    
Subjt:  ESTDHSLFDCNRAREIWKHTIN-RVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPC

Query:  PNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINL
        P + S+    +   ++W P      KLNTDA+ +  ST  G I RDS   +  A +       S  +AE++  +EG++ A +    +L VESD   AI L
Subjt:  PNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINL

Query:  ILRKSEKWGE
        I  +    G+
Subjt:  ILRKSEKWGE

XP_030495196.1 uncharacterized protein LOC115710989 [Cannabis sativa]2.5e-1531.94Show/hide
Query:  TDKSESV--TALESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLK-INSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYL
        TD + SV   A ES  H  F C+ A+ +W+  +++ F  +         +LK + SS +  EFE I    W IW+++N+V H+ +       A +  +YL
Subjt:  TDKSESV--TALESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLK-INSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYL

Query:  DCYRKANLKEPCPNSSSDCAVPKSR-DEHWVPPPDNFWKLNTDASWKQNST---VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGC
        D YR A LK   P +SS    P +     W PPP    KLN DA++ + S+   VGA+ R+ VGQ+  AL+      F++   E KA   G+   +    
Subjt:  DCYRKANLKEPCPNSSSDCAVPKSR-DEHWVPPPDNFWKLNTDASWKQNST---VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGC

Query:  ENLIVESDCAEAINLI
           IVE+D     N +
Subjt:  ENLIVESDCAEAINLI

XP_030943489.1 uncharacterized protein LOC115968280 [Quercus lobata]1.4e-1531.19Show/hide
Query:  ESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPCP
        ES  HSL  C  A+++W           +     +D  LKI    +A + E+   M+W+IW ++N+V H +   L      + K YL  Y+ A       
Subjt:  ESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPCP

Query:  NSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQ---NSTVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAIN
         +SS           W PPP   +K+N D +  +   NS+VG I RDS G I  A A++   +FSA   E  A   G+ LA  +G   +I+ESD    I 
Subjt:  NSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQ---NSTVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAIN

Query:  LI
         I
Subjt:  LI

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047867.7e-2332.67Show/hide
Query:  LESTDHSLFDCNRAREIWKHTINRVFLEE-NFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEP
        +E T H +  C RA++IW      +F    N N S  D WL +    + ++ +L A   WAIW D+N  AH + +     +  WI  Y   Y +A   + 
Subjt:  LESTDHSLFDCNRAREIWKHTINRVFLEE-NFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEP

Query:  CPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAIN
             S    P  R   W+PP D+  K+N+DA+ +  ST +G I RD  G +  A + F  +  +   AE++  +E ++LA S     L+VESDC EAI 
Subjt:  CPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAIN

Query:  LI
        L+
Subjt:  LI

A0A6J1CTE3 uncharacterized protein LOC1110145786.3e-1731.65Show/hide
Query:  LESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPC
        +E+TDH+LF C RA+E+W   + + F + +FN S  D  L +  S S  +F+L+    WAIWND+N +    +IP    ++ WI  Y+  ++  ++    
Subjt:  LESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPC

Query:  PNSSSDCAVPKSR--DEHWVPPPDNFWKLNTDASWKQN---STVGAIFRDSVGQIRGA
             + A    R  + +W PPP  + K+N DA+ K++   + +G + R+  GQI  A
Subjt:  PNSSSDCAVPKSR--DEHWVPPPDNFWKLNTDASWKQN---STVGAIFRDSVGQIRGA

A0A6J1DX30 uncharacterized protein LOC1110248744.4e-1830Show/hide
Query:  ESTDHSLFDCNRAREIWKHTIN-RVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPC
        ES  H+ F C RAR+IW+        L    N S  + W  +      ++  L A   W IWND+N + H  ++  V  K +W+  +LD + +A +    
Subjt:  ESTDHSLFDCNRAREIWKHTIN-RVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEPC

Query:  PNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINL
        P + S+    +   ++W P      KLNTDA+ +  ST  G I RDS   +  A +       S  +AE++  +EG++ A +    +L VESD   AI L
Subjt:  PNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINL

Query:  ILRKSEKWGE
        I  +    G+
Subjt:  ILRKSEKWGE

A0A803P623 Uncharacterized protein1.2e-1531.94Show/hide
Query:  TDKSESV--TALESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLK-INSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYL
        TD + SV   A ES  H  F C+ A+ +W+  +++ F  +         +LK + SS +  EFE I    W IW+++N+V H+ +       A +  +YL
Subjt:  TDKSESV--TALESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLK-INSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYL

Query:  DCYRKANLKEPCPNSSSDCAVPKSR-DEHWVPPPDNFWKLNTDASWKQNST---VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGC
        D YR A LK   P +SS    P +     W PPP    KLN DA++ + S+   VGA+ R+ VGQ+  AL+      F++   E KA   G+   +    
Subjt:  DCYRKANLKEPCPNSSSDCAVPKSR-DEHWVPPPDNFWKLNTDASWKQNST---VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGC

Query:  ENLIVESDCAEAINLI
           IVE+D     N +
Subjt:  ENLIVESDCAEAINLI

A0A803QEQ9 Uncharacterized protein5.4e-1628.38Show/hide
Query:  ESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCT--DRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEP
        ES +H+LF C+RA+E+W  +++ + L      + T  +  L  +++ S +EFEL  T+ W+IW ++N   H     L      +  +YL  Y+ A+    
Subjt:  ESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCT--DRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRKANLKEP

Query:  CPNSSS-------DCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST---VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIV
           S +       +     S  + W+ PP+  WKLNTDA+  ++S    +GA+ RDS G I+ AL+  +   F A   E  A    ++  +SLG    I+
Subjt:  CPNSSS-------DCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST---VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIV

Query:  ESDCAEAINLILRKSEKWGEVEAVLESIN
        E+D    +  +   SE       +L+ +N
Subjt:  ESDCAEAINLILRKSEKWGEVEAVLESIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.0e-0621.98Show/hide
Query:  ESTDHSLFDCNRAREIWKHTINRVFLEEN------------FN-GSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYL
        E+ +H LF C  AR  W  +   + L               FN G+   +W K +        +L+  + W +W ++N +             +  ++ L
Subjt:  ESTDHSLFDCNRAREIWKHTINRVFLEEN------------FN-GSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYL

Query:  DCYRKANLKEPCPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST---VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCE
        + +R     E C        V +S    W PPP  + K NTDA+W +++    +G + R+  G+++   A       S   AEL+A    V L++S    
Subjt:  DCYRKANLKEPCPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST---VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCE

Query:  NLIVESDCAEAINLILRKSEKWGEVEAVLESI
        N ++    ++ +  IL   E W  ++  ++ +
Subjt:  NLIVESDCAEAINLILRKSEKWGEVEAVLESI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACCGCATTTCTGGGCAGAAACAGACAAGTCCGAGTCCGTCACGGCTCTTGAATCCACTGACCATAGTTTGTTCGATTGTAATCGTGCGAGGGAAATTTGGAAACA
TACCATTAATCGGGTGTTCCTAGAAGAAAACTTCAACGGAAGCTGTACGGATAGATGGCTTAAGATTAACTCGAGTTGTTCTGCAAGGGAGTTTGAATTGATTGCAACTA
TGAGCTGGGCGATTTGGAATGACAAAAACAGAGTAGCTCACAACAATGAGATTCCCCTAGTAATAACTAAAGCCAAATGGATCAAAGAGTACTTGGATTGCTATCGGAAA
GCTAATTTGAAAGAGCCTTGCCCTAATTCCTCCTCCGATTGCGCAGTTCCGAAGTCAAGAGATGAGCACTGGGTTCCTCCTCCTGATAATTTCTGGAAACTTAACACGGA
TGCATCCTGGAAGCAGAATTCAACCGTTGGAGCCATATTTAGGGATTCAGTCGGGCAAATTCGAGGGGCTTTAGCTTCCTTCTATGATGTTGAGTTTTCAGCTCCAATTG
CTGAGTTAAAAGCAACTGTTGAGGGTGTCCGGCTTGCTGTATCATTAGGATGCGAGAATCTCATTGTGGAGTCTGATTGTGCAGAGGCCATTAATCTAATTTTGAGGAAA
TCAGAAAAATGGGGGGAGGTGGAGGCTGTCCTAGAGTCCATTAATTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGACCGCATTTCTGGGCAGAAACAGACAAGTCCGAGTCCGTCACGGCTCTTGAATCCACTGACCATAGTTTGTTCGATTGTAATCGTGCGAGGGAAATTTGGAAACA
TACCATTAATCGGGTGTTCCTAGAAGAAAACTTCAACGGAAGCTGTACGGATAGATGGCTTAAGATTAACTCGAGTTGTTCTGCAAGGGAGTTTGAATTGATTGCAACTA
TGAGCTGGGCGATTTGGAATGACAAAAACAGAGTAGCTCACAACAATGAGATTCCCCTAGTAATAACTAAAGCCAAATGGATCAAAGAGTACTTGGATTGCTATCGGAAA
GCTAATTTGAAAGAGCCTTGCCCTAATTCCTCCTCCGATTGCGCAGTTCCGAAGTCAAGAGATGAGCACTGGGTTCCTCCTCCTGATAATTTCTGGAAACTTAACACGGA
TGCATCCTGGAAGCAGAATTCAACCGTTGGAGCCATATTTAGGGATTCAGTCGGGCAAATTCGAGGGGCTTTAGCTTCCTTCTATGATGTTGAGTTTTCAGCTCCAATTG
CTGAGTTAAAAGCAACTGTTGAGGGTGTCCGGCTTGCTGTATCATTAGGATGCGAGAATCTCATTGTGGAGTCTGATTGTGCAGAGGCCATTAATCTAATTTTGAGGAAA
TCAGAAAAATGGGGGGAGGTGGAGGCTGTCCTAGAGTCCATTAATTCCTAG
Protein sequenceShow/hide protein sequence
MRPHFWAETDKSESVTALESTDHSLFDCNRAREIWKHTINRVFLEENFNGSCTDRWLKINSSCSAREFELIATMSWAIWNDKNRVAHNNEIPLVITKAKWIKEYLDCYRK
ANLKEPCPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNSTVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLILRK
SEKWGEVEAVLESINS