CuGenDBv2

Gene ID	Spg029531
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	exosome complex component CSL4
Genome location	scaffold2:22030315..22034430
RNA-Seq Expression	Spg029531
Synteny	Spg029531
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0000178 - exosome (RNase complex) (cellular component)
InterPro domains	IPR025721 - Exosome complex component, N-terminal domain IPR039771 - Exosome complex component Csl4

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588300.1 Bifunctional TH2 protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-27

61.6

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PP+DSSD                                         RPTV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQV
        EVTGHKAHGAVPAPGSIVIARV +V
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQV

KAG7020862.1 Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-27

61.6

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PP+DSSD                                         RPTV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQV
        EVTGHKAHGAVPAPGSIVIARV +V
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQV

XP_022934020.1 exosome complex component CSL4 [Cucurbita moschata]

4.4e-27

60.8

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PP+DSSD                                         RPTV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQV
        EVTGHKAHGAVPAPGSIV ARV +V
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQV

XP_022974279.1 exosome complex component CSL4 [Cucurbita maxima]

7.6e-27

60.8

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MK GEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PP+DSSD                                         RPTV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQV
        EVTGHKAHGAVPAPGSIVIARV +V
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQV

XP_023530831.1 exosome complex component CSL4 [Cucurbita pepo subsp. pepo]

1.2e-27

61.6

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PP+DSSD                                         RPTV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQV
        EVTGHKAHGAVPAPGSIVIARV +V
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L935 Uncharacterized protein

2.9e-24

56.8

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MKEGE++TEFVTPGEVLG FSD K G+GAYV +NTVYASLSGFR II PPSDSSDL                                        R TV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQV
        EVTGHKAHGAVPAPGSIVI RV +V
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQV

A0A1S3CMV8 exosome complex component CSL4

1.8e-26

59.2

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MKEGE+ETEFVTPGE+LG FSD K G+GAYVA+NTVYASLSGFR IIPPPSDSSDL                                        R TV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQV
        EVTGHKAHGAVPAPGSIVIARV +V
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQV

A0A6J1DE54 exosome complex component CSL4

8.5e-24

53.28

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MKE  EET+FVTPGEVLGK SDLK GKGAYVANNTVYASLSGFR I+PPP +SSD                                         RPTV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQVSDFKEALAQLCL
        EVTGHKAHGAVPAPGS+VIARV  V     +   +C+
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQVSDFKEALAQLCL

A0A6J1F6G8 exosome complex component CSL4

2.2e-27

60.8

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MKEGEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PP+DSSD                                         RPTV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQV
        EVTGHKAHGAVPAPGSIV ARV +V
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQV

A0A6J1IH52 exosome complex component CSL4

3.7e-27

60.8

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Query:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV
        MK GEEETEFVTPGEVLGKFSD+K GKGAYVANNTVYASLSGFR II PP+DSSD                                         RPTV
Subjt:  MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTV

Query:  EVTGHKAHGAVPAPGSIVIARVGQV
        EVTGHKAHGAVPAPGSIVIARV +V
Subjt:  EVTGHKAHGAVPAPGSIVIARVGQV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G38890.1 Nucleic acid-binding, OB-fold-like protein

1.0e-13

36.03

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Query:  TEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTVEVTGHKA
        T  VTPG+V+GK ++ K GKGAYV + T+YASL+G   I+ P  +S D                                        +R  VEVTGHKA
Subjt:  TEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTVEVTGHKA

Query:  HGAVPAPGSIVIARVGQVSDFKEALAQLCLLASIAR
        HG +P  GS+VIARV +V     A+  LC+ +   R
Subjt:  HGAVPAPGSIVIARVGQVSDFKEALAQLCLLASIAR

Sequences

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CDS sequence

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ATGAAAGAAGGCGAGGAAGAGACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACTTGAAAGTTGGAAAAGGCGCTTATGTCGCCAACAACACTGTTTA
TGCTTCTCTTTCTGGTTTCCGCAGCATTATTCCCCCTCCATCCGACTCTTCGGATTTGGGAGGTTCAACATCTAATGTGCTTTCCTTCAAACCCTGTTGTAGTTTCTTGG
TTAGGTTGGTGATTAAGGTTCTTATAGTGTTGGATAAGGAGATGCGTAGGACTCTTTCCCTACCAAAGAGACCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCT
GTTCCAGCTCCTGGATCAATTGTCATTGCTCGAGTTGGCCAGGTGAGCGACTTCAAAGAGGCGCTCGCCCAGCTATGCCTCCTTGCTAGCATCGCCCGTCGCCTTGACGA
AGGCGAGCTCCTCTTTGAATTACCCGTTTTTTTAATGGAAGTTAAAAGAAAACCTAAGCACATGTAA

mRNA sequence

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Protein sequence

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MKEGEEETEFVTPGEVLGKFSDLKVGKGAYVANNTVYASLSGFRSIIPPPSDSSDLGGSTSNVLSFKPCCSFLVRLVIKVLIVLDKEMRRTLSLPKRPTVEVTGHKAHGA
VPAPGSIVIARVGQVSDFKEALAQLCLLASIARRLDEGELLFELPVFLMEVKRKPKHM

Spg029531 (gene) of Sponge gourd (cylindrica) v1 genome