; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029558 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029558
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionexosome complex component CSL4
Genome locationscaffold2:22003629..22006575
RNA-Seq ExpressionSpg029558
SyntenySpg029558
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0072488 - ammonium transmembrane transport (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008519 - ammonium transmembrane transporter activity (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR019495 - Exosome complex component CSL4, C-terminal
IPR039771 - Exosome complex component Csl4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6750711.1 hypothetical protein POTOM_045220 [Populus tomentosa]1.8e-3677.19Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLL------PVHKAC--KRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCP
        RQQDVRATEIDKVDMHLSFRPGDIV+ALVVSF+ E  +L       +H  C  K  + LSLGDARAY+LSTAKNELGVVSAES+AGA MVPISWTEMQCP
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLL------PVHKAC--KRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCP

Query:  LTGQIQQRKVAKVG
        LTGQI+QRKVAKVG
Subjt:  LTGQIQQRKVAKVG

KAG7020862.1 Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma]4.3e-3579.63Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYHLSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVGGS
        KVAKVGGS
Subjt:  KVAKVGGS

XP_022934020.1 exosome complex component CSL4 [Cucurbita moschata]5.7e-3578.7Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYHLSTAKNELGVVSAES+AGAVM+PISWTEMQCPLTGQIQQR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVGGS
        KVAKVGGS
Subjt:  KVAKVGGS

XP_022974279.1 exosome complex component CSL4 [Cucurbita maxima]4.3e-3579.63Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYHLSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVGGS
        KVAKVGGS
Subjt:  KVAKVGGS

XP_023530831.1 exosome complex component CSL4 [Cucurbita pepo subsp. pepo]4.3e-3579.63Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYHLSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVGGS
        KVAKVGGS
Subjt:  KVAKVGGS

TrEMBL top hitse value%identityAlignment
A0A0A0L935 Uncharacterized protein6.7e-3477.57Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYHLSTAKNELGVVSAES+AGA MVPISWTEMQCP+TGQIQQR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVGG
        KVAKVGG
Subjt:  KVAKVGG

A0A1S3CMV8 exosome complex component CSL41.5e-3376.64Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDA+AYHLSTAKNELGVVSAES+AGA MVPISWTEMQCP+TGQIQQR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVGG
        KVAKVGG
Subjt:  KVAKVGG

A0A6J1DE54 exosome complex component CSL46.1e-3579.44Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYHLSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVGG
        KVAKVGG
Subjt:  KVAKVGG

A0A6J1F6G8 exosome complex component CSL42.7e-3578.7Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYHLSTAKNELGVVSAES+AGAVM+PISWTEMQCPLTGQIQQR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVGGS
        KVAKVGGS
Subjt:  KVAKVGGS

A0A6J1IH52 exosome complex component CSL42.1e-3579.63Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYHLSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVGGS
        KVAKVGGS
Subjt:  KVAKVGGS

SwissProt top hitse value%identityAlignment
O59821 Exosome complex component csl42.7e-1142.72Show/hide
Query:  QDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESS-AGAVMVPISWTEMQCPLTGQIQQRK
        QD+RATE +KV +  SFRPGDIV+ALV+                     SLGD  +Y L+TA+N+LGV+ A+SS  G  M P+ +  MQ   +G  + RK
Subjt:  QDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESS-AGAVMVPISWTEMQCPLTGQIQQRK

Query:  VAK
         AK
Subjt:  VAK

P53859 Exosome complex component CSL42.0e-1140.57Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESS--AGAVMVPISWTEMQCPLTGQIQ
        R QDVR+T+ D+V +   F+PGDIV+A V                     LSLGD   Y+L+TA+N+LGVV A ++  AG +M    W  M  P+TG  +
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESS--AGAVMVPISWTEMQCPLTGQIQ

Query:  QRKVAK
        +RK AK
Subjt:  QRKVAK

Q9DAA6 Exosome complex component CSL48.5e-1850.94Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARA-YHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQ
        R++D+RATE DKV+++ SFRPGDIV A V+                     SLGDA++ Y L+TA+NELGVV A S +G  MVPISW EMQCP T   + 
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARA-YHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQ

Query:  RKVAKV
        RKVA+V
Subjt:  RKVAKV

Q9Y3B2 Exosome complex component CSL48.5e-1851.89Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARA-YHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQ
        R++DVRATE DKV+++ SFRPGDIV A V+                     SLGDA++ Y L+TA+NELGVV A S +G  MVPISW EMQCP T   + 
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARA-YHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQ

Query:  RKVAKV
        RKVA+V
Subjt:  RKVAKV

Arabidopsis top hitse value%identityAlignment
AT5G38890.1 Nucleic acid-binding, OB-fold-like protein4.8e-3268.87Show/hide
Query:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR
        RQQDVRATEIDKVDMH SF  GDIV+A+V                     LSLGDARAY+LSTAKNELGVVSAES+AG  MVPISWTEMQCPL+GQ +QR
Subjt:  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQR

Query:  KVAKVG
        KVAKVG
Subjt:  KVAKVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCGGACGACGGCGGCGGAGGCTTAAGCAGGGAACGGCGGCGCCGGCGACTGCTGTGGAAGCGGCGGCAATGGGCAAAGATTGATAACGAGCTACTATTGCCATC
TGAATCTCCAACCATTCCCTTGGGGAGTTACATGAATGTGGGGTGTGCCAAACAAGCAAGGCAACAAGATGTCCGGGCAACGGAGATTGATAAAGTAGATATGCATTTGT
CATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCTTGAATTCCCTCTGTTGCCTGTCCATAAAGCATGCAAAAGGACCCATTTACTTTCTCTCGGA
GATGCAAGGGCCTATCATCTATCAACTGCAAAAAACGAACTCGGTGTCGTCTCTGCAGAAAGTTCAGCAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTG
TCCATTAACAGGACAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCGGACGACGGCGGCGGAGGCTTAAGCAGGGAACGGCGGCGCCGGCGACTGCTGTGGAAGCGGCGGCAATGGGCAAAGATTGATAACGAGCTACTATTGCCATC
TGAATCTCCAACCATTCCCTTGGGGAGTTACATGAATGTGGGGTGTGCCAAACAAGCAAGGCAACAAGATGTCCGGGCAACGGAGATTGATAAAGTAGATATGCATTTGT
CATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCTTGAATTCCCTCTGTTGCCTGTCCATAAAGCATGCAAAAGGACCCATTTACTTTCTCTCGGA
GATGCAAGGGCCTATCATCTATCAACTGCAAAAAACGAACTCGGTGTCGTCTCTGCAGAAAGTTCAGCAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTG
TCCATTAACAGGACAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGATCATGA
Protein sequenceShow/hide protein sequence
MWSDDGGGGLSRERRRRRLLWKRRQWAKIDNELLLPSESPTIPLGSYMNVGCAKQARQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLG
DARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS