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Spg029596 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029596
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionexosome complex component CSL4
Genome locationscaffold2:22015202..22019950
RNA-Seq ExpressionSpg029596
SyntenySpg029596
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG66148.1 hypothetical protein EZV62_007423 [Acer yangbiense]1.4e-0581.58Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++  +VTKVM+RMASADIMCVGPKSVKEKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
XP_004144376.1 exosome complex component CSL4 [Cucumis sativus]1.4e-0578.95Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++ ++VTKVM++MASADIMCVGPKSVKEKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
XP_023516677.1 uncharacterized protein LOC111780489 [Cucurbita pepo subsp. pepo]1.9e-0581.58Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++  +VTKVMSRMASADIMCVGP SVKEKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
XP_034682582.1 exosome complex component CSL4 [Vitis riparia]2.5e-0578.95Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++  +VTKVM+RMASADIMCVGPKSV+EKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
XP_038879159.1 exosome complex component CSL4 [Benincasa hispida]1.1e-0581.58Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++  +VTKVMS+MASADIMCVGPKSVKEKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
TrEMBL top hitse value%identityAlignment
A0A0A0L935 Uncharacterized protein7.0e-0678.95Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++ ++VTKVM++MASADIMCVGPKSVKEKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
A0A1S3CMV8 exosome complex component CSL41.2e-0578.95Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++  +VTKVM++MASADIMCVGPKSVKEKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
A0A5C7IAI2 Uncharacterized protein7.0e-0681.58Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++  +VTKVM+RMASADIMCVGPKSVKEKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
A0A6J1DE54 exosome complex component CSL41.2e-0581.58Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++  +VT VMSRMASADIMCVGPKSVKEKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
D7TDS0 Uncharacterized protein1.2e-0578.95Show/hide
Query:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        S++  +VTKVM+RMASADIMCVGPKSV+EKFTGIIR Q
Subjt:  SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G38890.1 Nucleic acid-binding, OB-fold-like protein3.4e-0552.5Show/hide
Query:  SSSLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ
        + S++  +VTKVM++MA+ DI+CVG K+V+E F G+IR Q
Subjt:  SSSLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCTACGTCCAGTTCTCTGCTACCGATGCAGGTCACAAAAGTAATGTCTAGAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTT
TACTGGAATTATAAGAGTTCAGATTCAGGTTCCTTATACAATTATCATCCCAACTCGAAGCCTCAAATCATTGCTGCAAATTGACGATTCATTTCATTACATTACACTGG
ATATTCATCAAGTGGCCGCCATTAGAGATGGTTCTGGAAGTTCTTCTTCCCTGGTCACTGGTGTTCGAATTGGAAAGAATCCTTCTTGTTTTGATTCTGATGGAGAATCA
GATGTTAGTAGTGTGGAGTCAATTTTTCAAATTCTAGAATTAGAGTTGGTTGATCAGGTTGAAGACAATTCATTTGTTGAAGCATTTGAAAATCTATTTGAAGATAATGA
ACAAGATGTCGATAATTTCGAGGGAGTAGTTTCTCCGGTGGTTTCTCCTCAAATCCCAGCCAAATTTTCTTCTCTTATTAAGTTATGTGGCTTACAGATGCAGACAATTC
TTAATTTGTTTCCGGTAGTTAAAGCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGCTACGTCCAGTTCTCTGCTACCGATGCAGGTCACAAAAGTAATGTCTAGAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTT
TACTGGAATTATAAGAGTTCAGATTCAGGTTCCTTATACAATTATCATCCCAACTCGAAGCCTCAAATCATTGCTGCAAATTGACGATTCATTTCATTACATTACACTGG
ATATTCATCAAGTGGCCGCCATTAGAGATGGTTCTGGAAGTTCTTCTTCCCTGGTCACTGGTGTTCGAATTGGAAAGAATCCTTCTTGTTTTGATTCTGATGGAGAATCA
GATGTTAGTAGTGTGGAGTCAATTTTTCAAATTCTAGAATTAGAGTTGGTTGATCAGGTTGAAGACAATTCATTTGTTGAAGCATTTGAAAATCTATTTGAAGATAATGA
ACAAGATGTCGATAATTTCGAGGGAGTAGTTTCTCCGGTGGTTTCTCCTCAAATCCCAGCCAAATTTTCTTCTCTTATTAAGTTATGTGGCTTACAGATGCAGACAATTC
TTAATTTGTTTCCGGTAGTTAAAGCTCTTTAG
Protein sequenceShow/hide protein sequence
MWATSSSLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQIQVPYTIIIPTRSLKSLLQIDDSFHYITLDIHQVAAIRDGSGSSSSLVTGVRIGKNPSCFDSDGES
DVSSVESIFQILELELVDQVEDNSFVEAFENLFEDNEQDVDNFEGVVSPVVSPQIPAKFSSLIKLCGLQMQTILNLFPVVKAL