; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029626 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029626
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:19795804..19803696
RNA-Seq ExpressionSpg029626
SyntenySpg029626
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]9.7e-0657.97Show/hide
Query:  QVESQALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVV
        QVES+A  G VGKLIQ+PTT     PRGNR SLQTR+L KT   +          L TLSVL DNDAVV
Subjt:  QVESQALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVV

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-0748.81Show/hide
Query:  FRTFWVVQVESQALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE
        F   WV++V    L  +          PRGNR SLQT ++ KT             PL TLSVL DNDAVVSAG+APLRQRRWE
Subjt:  FRTFWVVQVESQALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]4.4e-1464.63Show/hide
Query:  QVESQALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE
        QVES+ALF MVGKLIQ+PTT     PRGNR SLQT +L KT              L TLSVLCDND VVSAGRA LRQRRWE
Subjt:  QVESQALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-0748.81Show/hide
Query:  FRTFWVVQVESQALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE
        F   WV++V    L  +          PRGNR SLQT ++ KT             PL TLSVL DNDAVVSAG+APLRQRRWE
Subjt:  FRTFWVVQVESQALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE

TYK27372.1 uncharacterized protein E5676_scaffold325G00500 [Cucumis melo var. makuwa]7.4e-0663.16Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE
        PRGNR SLQT +L KT              L TLSVLCDND VVSAGRA LRQRRWE
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.5e-0748.81Show/hide
Query:  FRTFWVVQVESQALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE
        F   WV++V    L  +          PRGNR SLQT ++ KT             PL TLSVL DNDAVVSAG+APLRQRRWE
Subjt:  FRTFWVVQVESQALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE

A0A5A7TPS6 Retrotrans_gag domain-containing protein2.1e-1464.63Show/hide
Query:  QVESQALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE
        QVES+ALF MVGKLIQ+PTT     PRGNR SLQT +L KT              L TLSVLCDND VVSAGRA LRQRRWE
Subjt:  QVESQALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE

A0A5D3BTP3 Reverse transcriptase1.5e-0748.81Show/hide
Query:  FRTFWVVQVESQALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE
        F   WV++V    L  +          PRGNR SLQT ++ KT             PL TLSVL DNDAVVSAG+APLRQRRWE
Subjt:  FRTFWVVQVESQALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE

A0A5D3BV68 Reverse transcriptase4.7e-0657.97Show/hide
Query:  QVESQALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVV
        QVES+A  G VGKLIQ+PTT     PRGNR SLQTR+L KT   +          L TLSVL DNDAVV
Subjt:  QVESQALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVV

A0A5D3DV36 Retrotrans_gag domain-containing protein3.6e-0663.16Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE
        PRGNR SLQT +L KT              L TLSVLCDND VVSAGRA LRQRRWE
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCCACAAGCCCGTTCTATGGCGGGAGAGTAGTGGGGAAGATCTTGATGGTCGTCCATGAAGTGTTCGTGAACTTGAACACAAGAGGACAAGACAGCAGACAGAG
GACCCAGCGTCGAGAAGCTGATGATAACACTCGGGATTTGGAATCCCTTACTTCACGGCAGCATGAGAATGGAAAGGCGATACATGTAAAAAGGGTTGGGGTTCGAACCT
ATGAGACCTTATGGTCTGCCACTCATTCTGCAGTCTTCATCTCCGGCGGTCCTTCTTCCGGTAAGTGGCTGCACGACAACGAAGGTGAAGCAGGGGCGACGCTCGCGGGC
CGTGCGTTTGAGTTTGGCAGCAAGGGCAAGGTTTCTCTCTTCTTCAGCACGGTAGGATCCAGTGCAGCATGTGGCCTTCATTCAATCCGACGGCGACGTCTTCGCGTGGT
CGCGTACCTCCCAACCACCAACGGTCCTTTCCTTTTGTTTTCTTCTTCTCTAGGTGTTCCTCTCAGCCGTCTTCACCTCCAAGCCGTGACCACCTGCAACACTCGAGATC
CAGCGGCGGTTTCGTCTGTAAAGCGAGCAGAGAGTGAGTTCCGTTGTTGTTTTCCCTCGTTTTTCCCTTCGATTATCCTCCCTCAGTTTGCGTTTGAGTTTCAGGTCTCG
TGGTTGGTCATTTTGGAGAGTATTTCGCACGACAGTAGGATTTTTCCGCGATTTAAGGTGGTTGTGCAGCGTGGTCGCACGATAGAAAGCTTTCGGGTTATCTCTTCGTC
GTTTCTGGCCAAGCGTTCTTCGTCAAATCGGATGGTTCAAGTAGCGGGTCTTCTAGTTGCAGCGTCGTTGAGCAATATCGGTGGTGGGCCCGGATTGGAGGTAGCGTCGC
GACGCTATATTGCACAGCGTCACGACGCTGCTATGCACGCGTCGTGTTGCCCAAGAAATGGACAGCATCGCGACGCTGTCTACACAGCGTCTCGACGCTGTGCCATTTTC
CAGCAATTCCAGCTTCGGTTTGGGCTAATTTTTGGGCCTTCTCTTCACTTCTTTTTGGGCTTTTCCATCATGATTGGCCTCTTTGGATCCCCTTTTGATCCAAGCTTGGA
TTTGGGCTTCATTAGCTTCATTTTTTGCACTTTTTCTCCCAAAATCACCGACTTTGCTCCTAAGGACCAAATAATAGAATACGATTTTCGAGCAAAGCAGGAGGATCTCT
GGTTTCCTCTGGTGTTTCGAACATTCTGGGTTGTACAAGTTGAATCCCAAGCTCTCTTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATAGG
TCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGC
TGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCCACAAGCCCGTTCTATGGCGGGAGAGTAGTGGGGAAGATCTTGATGGTCGTCCATGAAGTGTTCGTGAACTTGAACACAAGAGGACAAGACAGCAGACAGAG
GACCCAGCGTCGAGAAGCTGATGATAACACTCGGGATTTGGAATCCCTTACTTCACGGCAGCATGAGAATGGAAAGGCGATACATGTAAAAAGGGTTGGGGTTCGAACCT
ATGAGACCTTATGGTCTGCCACTCATTCTGCAGTCTTCATCTCCGGCGGTCCTTCTTCCGGTAAGTGGCTGCACGACAACGAAGGTGAAGCAGGGGCGACGCTCGCGGGC
CGTGCGTTTGAGTTTGGCAGCAAGGGCAAGGTTTCTCTCTTCTTCAGCACGGTAGGATCCAGTGCAGCATGTGGCCTTCATTCAATCCGACGGCGACGTCTTCGCGTGGT
CGCGTACCTCCCAACCACCAACGGTCCTTTCCTTTTGTTTTCTTCTTCTCTAGGTGTTCCTCTCAGCCGTCTTCACCTCCAAGCCGTGACCACCTGCAACACTCGAGATC
CAGCGGCGGTTTCGTCTGTAAAGCGAGCAGAGAGTGAGTTCCGTTGTTGTTTTCCCTCGTTTTTCCCTTCGATTATCCTCCCTCAGTTTGCGTTTGAGTTTCAGGTCTCG
TGGTTGGTCATTTTGGAGAGTATTTCGCACGACAGTAGGATTTTTCCGCGATTTAAGGTGGTTGTGCAGCGTGGTCGCACGATAGAAAGCTTTCGGGTTATCTCTTCGTC
GTTTCTGGCCAAGCGTTCTTCGTCAAATCGGATGGTTCAAGTAGCGGGTCTTCTAGTTGCAGCGTCGTTGAGCAATATCGGTGGTGGGCCCGGATTGGAGGTAGCGTCGC
GACGCTATATTGCACAGCGTCACGACGCTGCTATGCACGCGTCGTGTTGCCCAAGAAATGGACAGCATCGCGACGCTGTCTACACAGCGTCTCGACGCTGTGCCATTTTC
CAGCAATTCCAGCTTCGGTTTGGGCTAATTTTTGGGCCTTCTCTTCACTTCTTTTTGGGCTTTTCCATCATGATTGGCCTCTTTGGATCCCCTTTTGATCCAAGCTTGGA
TTTGGGCTTCATTAGCTTCATTTTTTGCACTTTTTCTCCCAAAATCACCGACTTTGCTCCTAAGGACCAAATAATAGAATACGATTTTCGAGCAAAGCAGGAGGATCTCT
GGTTTCCTCTGGTGTTTCGAACATTCTGGGTTGTACAAGTTGAATCCCAAGCTCTCTTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATAGG
TCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGC
TGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTTCTAG
Protein sequenceShow/hide protein sequence
MAPTSPFYGGRVVGKILMVVHEVFVNLNTRGQDSRQRTQRREADDNTRDLESLTSRQHENGKAIHVKRVGVRTYETLWSATHSAVFISGGPSSGKWLHDNEGEAGATLAG
RAFEFGSKGKVSLFFSTVGSSAACGLHSIRRRRLRVVAYLPTTNGPFLLFSSSLGVPLSRLHLQAVTTCNTRDPAAVSSVKRAESEFRCCFPSFFPSIILPQFAFEFQVS
WLVILESISHDSRIFPRFKVVVQRGRTIESFRVISSSFLAKRSSSNRMVQVAGLLVAASLSNIGGGPGLEVASRRYIAQRHDAAMHASCCPRNGQHRDAVYTASRRCAIF
QQFQLRFGLIFGPSLHFFLGFSIMIGLFGSPFDPSLDLGFISFIFCTFSPKITDFAPKDQIIEYDFRAKQEDLWFPLVFRTFWVVQVESQALFGMVGKLIQFPTTPRGNR
SSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWEF