; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029630 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029630
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:23379299..23387311
RNA-Seq ExpressionSpg029630
SyntenySpg029630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.5e-3351.1Show/hide
Query:  KSKEFSQPRQPVTTKDLFSKTF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV
        K ++F QPRQ +T  + F ++F   H KE       +   +          EEVDNS + +QRTSVFD IKP TTR SVFQR+S+   EEENQC  ST  
Subjt:  KSKEFSQPRQPVTTKDLFSKTF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV

Query:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
        R SAF+ LS+S SKK RPSTS FDRLK+ +DQ + +M +L+VK F E + + ++ S VPSRMKRK +V INTEGSL V  RF
Subjt:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-3452.2Show/hide
Query:  KSKEFSQPRQPVTTKDLFSKTF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV
        K ++  QPRQ +T  + F ++F   H +E     T +   +          EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC  ST  
Subjt:  KSKEFSQPRQPVTTKDLFSKTF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV

Query:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
        R SAF+RLS+S SKK RPSTS FDRLK+T+DQ + +M +L+ K F E + + ++ S VPSRMKRK +V INTEGSL V  RF
Subjt:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.4e-3450.82Show/hide
Query:  QKSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTS
        +K ++F QPR+ +T  + F ++F +   E         T+  ++V       EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC +ST 
Subjt:  QKSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTS

Query:  VRPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
         R SAF+RLS+S SKK RPSTS FDRLK+T+DQ + +M +L+ K F E + + ++ S VPSR+KRK ++ INTEGSL V  RF
Subjt:  VRPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3351.1Show/hide
Query:  KSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV
        K ++F QPR+ +T  +  S++F +   E         T+  ++V       EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST  
Subjt:  KSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV

Query:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
        R SAF+RLS+S SKK RPSTS FDRLK+T+DQ + +M +L+ K F E + + ++ + VPSRMKRK +V INTEGSL V  RF
Subjt:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3351.1Show/hide
Query:  KSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV
        K ++F QPR+ +T  +  S++F +   E         T+  ++V       EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST  
Subjt:  KSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV

Query:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
        R SAF+RLS+S SKK RPSTS FDRLK+T+DQ + +M +L+ K F E + + ++ + VPSRMKRK +V INTEGSL V  RF
Subjt:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein1.7e-3351.1Show/hide
Query:  KSKEFSQPRQPVTTKDLFSKTF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV
        K ++F QPRQ +T  + F ++F   H KE       +   +          EEVDNS + +QRTSVFD IKP TTR SVFQR+S+   EEENQC  ST  
Subjt:  KSKEFSQPRQPVTTKDLFSKTF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV

Query:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
        R SAF+ LS+S SKK RPSTS FDRLK+ +DQ + +M +L+VK F E + + ++ S VPSRMKRK +V INTEGSL V  RF
Subjt:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

A0A5A7TQ06 Retrotransposon gag protein1.5e-3452.2Show/hide
Query:  KSKEFSQPRQPVTTKDLFSKTF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV
        K ++  QPRQ +T  + F ++F   H +E     T +   +          EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC  ST  
Subjt:  KSKEFSQPRQPVTTKDLFSKTF---HKKEKENFATSYCIDV----------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV

Query:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
        R SAF+RLS+S SKK RPSTS FDRLK+T+DQ + +M +L+ K F E + + ++ S VPSRMKRK +V INTEGSL V  RF
Subjt:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

A0A5A7U974 Retrotransposon gag protein2.6e-3450.82Show/hide
Query:  QKSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTS
        +K ++F QPR+ +T  + F ++F +   E         T+  ++V       EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC +ST 
Subjt:  QKSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTS

Query:  VRPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
         R SAF+RLS+S SKK RPSTS FDRLK+T+DQ + +M +L+ K F E + + ++ S VPSR+KRK ++ INTEGSL V  RF
Subjt:  VRPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

A0A5A7UI09 Retrotransposon gag protein5.8e-3451.1Show/hide
Query:  KSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV
        K ++F QPR+ +T  +  S++F +   E         T+  ++V       EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST  
Subjt:  KSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV

Query:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
        R SAF+RLS+S SKK RPSTS FDRLK+T+DQ + +M +L+ K F E + + ++ + VPSRMKRK +V INTEGSL V  RF
Subjt:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

A0A5D3CCI8 Retrotransposon gag protein5.8e-3451.1Show/hide
Query:  KSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV
        K ++F QPR+ +T  +  S++F +   E         T+  ++V       EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST  
Subjt:  KSKEFSQPRQPVTTKDLFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSV

Query:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF
        R SAF+RLS+S SKK RPSTS FDRLK+T+DQ + +M +L+ K F E + + ++ + VPSRMKRK +V INTEGSL V  RF
Subjt:  RPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNLEVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGCCTTCAGGAGAATTCTGAGAGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGA
CGTAGTGACTGTCATGATGACTGAGACAAGAATTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAA
TCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAAAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTACGAAGGATCTC
TTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTT
CGATCACATTAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGTTCGACCTTCAG
CTTTCCAAAGGCTAAGTGTCTCCGCATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAGGAAAGATGGACAACTTA
GAGGTGAAACTATTCGATGAAGCAAGCAGTGAAAAGAGGCTTCAAAGTATTGTCCCGTCGCGTATGAAAAGAAAATTCACTGTTCTCATAAATACAGAAGGTTCCTTGAA
GGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCGCACACTTCGCTGCAGTTCCTTCTCTCCATGTTCGAGGGTTCTTACGCTGTACGCTACT
GCGTTGCTCATTCTCCAAGTTCGAAGGTTTGCACATTTTGTTATGATGCTTCGCTGCTGTTCCTTCCCCAAGTTCGAAGGTTCTGTCGTTGCGCTGTTGCGTTACTTCCT
TCTCTAAATTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTTACGCTGTTTCGTTTCAGTTTCTTCTTCTAAGATCAAAGGTTCTGAT
GCTGCGCTGCTTTCTTCGCCAAGTTCGAAAGTTCTCACGCTACGCTGCTTTCTTCTCTAAGTTCGAAGGTTCTCACGTTGAGGTTCTCACGCGCTTTGCTGCAGTTCCTT
CCTCCAAGTTCGAAGGTTCTTACGTTGTTTCATTGCAGTTCCTTCTTCCAAGATCGAAGATTCTCACGCTATGCGGTTTCGCTTGTGTTCATTCTACAAGTTCGAAGGTT
CTCATGCGCTACTCTATTGTTCCTTCTCCAAGTCCGAAGGTTTGCACGTGTTCTCATGTTGCTTTGCTACAGCTCCAGTTCCTTCTCACCAAGTTCGAGGGTTCTTACGC
TGTACGCTACTGTGTAGTTCCCTATTCTTCAAGTTTGAAGGTTCGCACGTTGTGCATTGATTCGTTGTCTACGCTTGCAACTTCTTACGTTGCGCTGCTTCGCTGTTGTG
CCTTCTCCAAGTTCGAAGGTTCTGCTTTACCGAAAGACGCTACAGCAGTAAAGGAGCCCAAGTGGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGCCTTCAGGAGAATTCTGAGAGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGA
CGTAGTGACTGTCATGATGACTGAGACAAGAATTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAA
TCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAAAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTACGAAGGATCTC
TTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTT
CGATCACATTAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGTTCGACCTTCAG
CTTTCCAAAGGCTAAGTGTCTCCGCATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAGGAAAGATGGACAACTTA
GAGGTGAAACTATTCGATGAAGCAAGCAGTGAAAAGAGGCTTCAAAGTATTGTCCCGTCGCGTATGAAAAGAAAATTCACTGTTCTCATAAATACAGAAGGTTCCTTGAA
GGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCGCACACTTCGCTGCAGTTCCTTCTCTCCATGTTCGAGGGTTCTTACGCTGTACGCTACT
GCGTTGCTCATTCTCCAAGTTCGAAGGTTTGCACATTTTGTTATGATGCTTCGCTGCTGTTCCTTCCCCAAGTTCGAAGGTTCTGTCGTTGCGCTGTTGCGTTACTTCCT
TCTCTAAATTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTTACGCTGTTTCGTTTCAGTTTCTTCTTCTAAGATCAAAGGTTCTGAT
GCTGCGCTGCTTTCTTCGCCAAGTTCGAAAGTTCTCACGCTACGCTGCTTTCTTCTCTAAGTTCGAAGGTTCTCACGTTGAGGTTCTCACGCGCTTTGCTGCAGTTCCTT
CCTCCAAGTTCGAAGGTTCTTACGTTGTTTCATTGCAGTTCCTTCTTCCAAGATCGAAGATTCTCACGCTATGCGGTTTCGCTTGTGTTCATTCTACAAGTTCGAAGGTT
CTCATGCGCTACTCTATTGTTCCTTCTCCAAGTCCGAAGGTTTGCACGTGTTCTCATGTTGCTTTGCTACAGCTCCAGTTCCTTCTCACCAAGTTCGAGGGTTCTTACGC
TGTACGCTACTGTGTAGTTCCCTATTCTTCAAGTTTGAAGGTTCGCACGTTGTGCATTGATTCGTTGTCTACGCTTGCAACTTCTTACGTTGCGCTGCTTCGCTGTTGTG
CCTTCTCCAAGTTCGAAGGTTCTGCTTTACCGAAAGACGCTACAGCAGTAAAGGAGCCCAAGTGGGAGTGA
Protein sequenceShow/hide protein sequence
MGSLQENSESQETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETRIMEERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQTQKSKEFSQPRQPVTTKDL
FSKTFHKKEKENFATSYCIDVEEVDNSKKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSVSTSVRPSAFQRLSVSASKKSRPSTSVFDRLKVTSDQPKGKMDNL
EVKLFDEASSEKRLQSIVPSRMKRKFTVLINTEGSLKVLTRFAAVPSLQVRRFSHTSLQFLLSMFEGSYAVRYCVAHSPSSKVCTFCYDASLLFLPQVRRFCRCAVALLP
SLNSKVLMRFAAVPSSKFEGSYAVSFQFLLLRSKVLMLRCFLRQVRKFSRYAAFFSKFEGSHVEVLTRFAAVPSSKFEGSYVVSLQFLLPRSKILTLCGFACVHSTSSKV
LMRYSIVPSPSPKVCTCSHVALLQLQFLLTKFEGSYAVRYCVVPYSSSLKVRTLCIDSLSTLATSYVALLRCCAFSKFEGSALPKDATAVKEPKWE