; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029634 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029634
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:23416500..23419979
RNA-Seq ExpressionSpg029634
SyntenySpg029634
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RLN32926.1 hypothetical protein C2845_PM03G31700 [Panicum miliaceum]8.6e-1630.86Show/hide
Query:  GRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGLRLAMETATRPFVLETDSMR
        G+    +   +PSR   RW  P+    K+NVD AF   SG+ G+G+V R+  G+V  AA        DA+ AE +    GL+LA +    P VLETD + 
Subjt:  GRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGLRLAMETATRPFVLETDSMR

Query:  VFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGPSCVLGLLAE
        V K ++   D + +L   +++ V  +   + +      R+ N VAH L + A ++   +VW++  P  V   +A+
Subjt:  VFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGPSCVLGLLAE

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]2.3e-2439.78Show/hide
Query:  MANLADWVVGYLNAFRDS--GRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVG
        + N+ DWV  YL  ++ +  G     LL+G   R V  W PP    FKVNVD AF   +  AG+ ++ RDS   V  +A  F  ++ D   AE L A  G
Subjt:  MANLADWVVGYLNAFRDS--GRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVG

Query:  LRLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTF--REGNCVAHRLARLAMEDKCDRVWMKE
        + LA+E    PF +ETDS +VF LL+ D ++ SE+G+L   ++R + +   IGG F+F  REGN  AH LAR+ M  +   VW++E
Subjt:  LRLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTF--REGNCVAHRLARLAMEDKCDRVWMKE

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]7.5e-2032.98Show/hide
Query:  RKKVPMANLADWVVGYLNAFR----DSGRREMDLLEGSPSRAVCR-------WAPPEVDGFKVNVDEAFCLVSGIAGVGV-VCRDSWGQVGFAATAFYEN
        +++V   +LA WV  Y+  F+    +      D+ +     +          W P E   FK+  D +F  +   AG+GV + RD  GQV  +AT + E+
Subjt:  RKKVPMANLADWVVGYLNAFR----DSGRREMDLLEGSPSRAVCR-------WAPPEVDGFKVNVDEAFCLVSGIAGVGV-VCRDSWGQVGFAATAFYEN

Query:  IIDADFAEGLGAAVGLRLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDK
        +   D AE L A  GLR+AMET   P +LETDS+R++ L  RD++ +S+ G ++E     +     +  +FT R GN +AH LAR A++ +
Subjt:  IIDADFAEGLGAAVGLRLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDK

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]2.6e-2034.59Show/hide
Query:  LADWVVGYLNAFRDSGRREMDLLEGSPSR----AVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGL
        L +W   Y+  FR++           P R    A   W PP+   +K+N D +F      AG+G++ R+  GQV  +AT + ENI   D AE + A  GL
Subjt:  LADWVVGYLNAFRDSGRREMDLLEGSPSR----AVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGL

Query:  RLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGP
        +LA +    P +LETDS R+F L  +  +++SE G +V  A            NF  REGN  AH LAR A+  +   +WM++ P
Subjt:  RLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGP

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]8.9e-2134.72Show/hide
Query:  MANLADWVVGYLNAFRDSGRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGLR
        +++L  W   YL  ++ + R     L       V  W PP     KVNVD AF   S +AGVGV+ RDS G V   A        D D+ EG     G+ 
Subjt:  MANLADWVVGYLNAFRDSGRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGLR

Query:  LAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPA-GWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGPSCVLGLLA
        LA+E     F +ETDS+R+F LL  D  + SE+G+L       + +    +  +FT R GN  AH LA+LA+     ++W++E P  +  +LA
Subjt:  LAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPA-GWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGPSCVLGLLA

TrEMBL top hitse value%identityAlignment
A0A3L6T7U7 RNase H domain-containing protein4.2e-1630.86Show/hide
Query:  GRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGLRLAMETATRPFVLETDSMR
        G+    +   +PSR   RW  P+    K+NVD AF   SG+ G+G+V R+  G+V  AA        DA+ AE +    GL+LA +    P VLETD + 
Subjt:  GRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGLRLAMETATRPFVLETDSMR

Query:  VFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGPSCVLGLLAE
        V K ++   D + +L   +++ V  +   + +      R+ N VAH L + A ++   +VW++  P  V   +A+
Subjt:  VFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGPSCVLGLLAE

A0A6J1C467 uncharacterized protein LOC1110077751.1e-2439.78Show/hide
Query:  MANLADWVVGYLNAFRDS--GRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVG
        + N+ DWV  YL  ++ +  G     LL+G   R V  W PP    FKVNVD AF   +  AG+ ++ RDS   V  +A  F  ++ D   AE L A  G
Subjt:  MANLADWVVGYLNAFRDS--GRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVG

Query:  LRLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTF--REGNCVAHRLARLAMEDKCDRVWMKE
        + LA+E    PF +ETDS +VF LL+ D ++ SE+G+L   ++R + +   IGG F+F  REGN  AH LAR+ M  +   VW++E
Subjt:  LRLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTF--REGNCVAHRLARLAMEDKCDRVWMKE

A0A6J1CDQ4 uncharacterized protein LOC1110105333.6e-2032.98Show/hide
Query:  RKKVPMANLADWVVGYLNAFR----DSGRREMDLLEGSPSRAVCR-------WAPPEVDGFKVNVDEAFCLVSGIAGVGV-VCRDSWGQVGFAATAFYEN
        +++V   +LA WV  Y+  F+    +      D+ +     +          W P E   FK+  D +F  +   AG+GV + RD  GQV  +AT + E+
Subjt:  RKKVPMANLADWVVGYLNAFR----DSGRREMDLLEGSPSRAVCR-------WAPPEVDGFKVNVDEAFCLVSGIAGVGV-VCRDSWGQVGFAATAFYEN

Query:  IIDADFAEGLGAAVGLRLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDK
        +   D AE L A  GLR+AMET   P +LETDS+R++ L  RD++ +S+ G ++E     +     +  +FT R GN +AH LAR A++ +
Subjt:  IIDADFAEGLGAAVGLRLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDK

A0A6J1CIF1 uncharacterized protein LOC1110112371.3e-2034.59Show/hide
Query:  LADWVVGYLNAFRDSGRREMDLLEGSPSR----AVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGL
        L +W   Y+  FR++           P R    A   W PP+   +K+N D +F      AG+G++ R+  GQV  +AT + ENI   D AE + A  GL
Subjt:  LADWVVGYLNAFRDSGRREMDLLEGSPSR----AVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGL

Query:  RLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGP
        +LA +    P +LETDS R+F L  +  +++SE G +V  A            NF  REGN  AH LAR A+  +   +WM++ P
Subjt:  RLAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGP

A0A6J1DBJ7 uncharacterized protein LOC1110189734.3e-2134.72Show/hide
Query:  MANLADWVVGYLNAFRDSGRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGLR
        +++L  W   YL  ++ + R     L       V  W PP     KVNVD AF   S +AGVGV+ RDS G V   A        D D+ EG     G+ 
Subjt:  MANLADWVVGYLNAFRDSGRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGLR

Query:  LAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPA-GWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGPSCVLGLLA
        LA+E     F +ETDS+R+F LL  D  + SE+G+L       + +    +  +FT R GN  AH LA+LA+     ++W++E P  +  +LA
Subjt:  LAMETATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPA-GWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGPSCVLGLLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGAGGAAGAAGGTCCCGATGGCGAATCTGGCAGATTGGGTGGTTGGGTATCTGAACGCATTCCGTGATTCGGGGAGGAGGGAGATGGATCTGTTGGAGGGAAG
TCCTAGTCGGGCTGTTTGCAGGTGGGCGCCGCCAGAGGTTGATGGGTTCAAGGTGAATGTTGATGAGGCCTTTTGTCTGGTGAGCGGAATAGCAGGTGTAGGTGTGGTAT
GTCGAGATTCTTGGGGGCAAGTGGGTTTCGCAGCTACGGCCTTCTATGAGAATATCATAGATGCTGACTTTGCAGAAGGTTTGGGGGCTGCTGTCGGCCTAAGACTTGCT
ATGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGATTCTATGCGGGTGTTCAAGCTGCTGCAGCGGGATAGAGATGAGATGTCGGAGTTGGGGATGTTGGTGGAGGA
TGCGGTGAGGGGTGTTCCAGCGGGGTGGTTTATCGGCGGCAACTTTACGTTCAGGGAAGGCAACTGCGTTGCCCATCGTTTGGCAAGGTTGGCGATGGAGGACAAATGTG
ACCGAGTGTGGATGAAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAAAGGGAGTGCATGAGTTTCCCCATGCGAGGAGGGGAGGGCTAGTGGGCTTTGGTTTA
AGTCTGGATGCACCTGAGCACCAGGCTAATTTATTGTTTTACTCTTGTAGTTTTGAAGGCTCTAGATTGTTTTATGAGCTCTATAGATCTGTTGTCACCCCGATAGGTGT
AAGGCTGGGCGGGATGTCTAATTGTTGCAATCTTGCGTGTGTGCTTGACCTAGGGGCTGCTTTAGGTGAGGCTTTGCACTTGCATGCGCATGAGGTTTCGTTGGGGTGTA
CAGACAGCTCTCTCTCTTCCATCTGTGTACCAGCTGCCGCTCCTCCCTCCGTTGACCTCCGCCGCACCGCCATCGCCTCTCGTCCGTCGCCGGTCGCGCCGCCTTCCTCC
GTTCACGCTCGCCGCACATCGCCGCTTCTCTTCTCCGGTCACCATCGCAAATCAGCATCGTCGCGGGTACAAACGAACCAAACCGCTGCACCGTCGCCGCACAGAACCAA
ACAGCCCCAGCGCCGTTGCCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGTCAAAAGAGAGCCTTCAGGGGAATTCTCTGAGAGTAGGAGAATGAATG
GGATGCCTTTCACCCCACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGAGGAAGAAGGTCCCGATGGCGAATCTGGCAGATTGGGTGGTTGGGTATCTGAACGCATTCCGTGATTCGGGGAGGAGGGAGATGGATCTGTTGGAGGGAAG
TCCTAGTCGGGCTGTTTGCAGGTGGGCGCCGCCAGAGGTTGATGGGTTCAAGGTGAATGTTGATGAGGCCTTTTGTCTGGTGAGCGGAATAGCAGGTGTAGGTGTGGTAT
GTCGAGATTCTTGGGGGCAAGTGGGTTTCGCAGCTACGGCCTTCTATGAGAATATCATAGATGCTGACTTTGCAGAAGGTTTGGGGGCTGCTGTCGGCCTAAGACTTGCT
ATGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGATTCTATGCGGGTGTTCAAGCTGCTGCAGCGGGATAGAGATGAGATGTCGGAGTTGGGGATGTTGGTGGAGGA
TGCGGTGAGGGGTGTTCCAGCGGGGTGGTTTATCGGCGGCAACTTTACGTTCAGGGAAGGCAACTGCGTTGCCCATCGTTTGGCAAGGTTGGCGATGGAGGACAAATGTG
ACCGAGTGTGGATGAAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAAAGGGAGTGCATGAGTTTCCCCATGCGAGGAGGGGAGGGCTAGTGGGCTTTGGTTTA
AGTCTGGATGCACCTGAGCACCAGGCTAATTTATTGTTTTACTCTTGTAGTTTTGAAGGCTCTAGATTGTTTTATGAGCTCTATAGATCTGTTGTCACCCCGATAGGTGT
AAGGCTGGGCGGGATGTCTAATTGTTGCAATCTTGCGTGTGTGCTTGACCTAGGGGCTGCTTTAGGTGAGGCTTTGCACTTGCATGCGCATGAGGTTTCGTTGGGGTGTA
CAGACAGCTCTCTCTCTTCCATCTGTGTACCAGCTGCCGCTCCTCCCTCCGTTGACCTCCGCCGCACCGCCATCGCCTCTCGTCCGTCGCCGGTCGCGCCGCCTTCCTCC
GTTCACGCTCGCCGCACATCGCCGCTTCTCTTCTCCGGTCACCATCGCAAATCAGCATCGTCGCGGGTACAAACGAACCAAACCGCTGCACCGTCGCCGCACAGAACCAA
ACAGCCCCAGCGCCGTTGCCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGTCAAAAGAGAGCCTTCAGGGGAATTCTCTGAGAGTAGGAGAATGAATG
GGATGCCTTTCACCCCACCCTAG
Protein sequenceShow/hide protein sequence
MRQRKKVPMANLADWVVGYLNAFRDSGRREMDLLEGSPSRAVCRWAPPEVDGFKVNVDEAFCLVSGIAGVGVVCRDSWGQVGFAATAFYENIIDADFAEGLGAAVGLRLA
METATRPFVLETDSMRVFKLLQRDRDEMSELGMLVEDAVRGVPAGWFIGGNFTFREGNCVAHRLARLAMEDKCDRVWMKEGPSCVLGLLAEKGVHEFPHARRGGLVGFGL
SLDAPEHQANLLFYSCSFEGSRLFYELYRSVVTPIGVRLGGMSNCCNLACVLDLGAALGEALHLHAHEVSLGCTDSSLSSICVPAAAPPSVDLRRTAIASRPSPVAPPSS
VHARRTSPLLFSGHHRKSASSRVQTNQTAAPSPHRTKQPQRRCRYDSETSRGRRLVGVKREPSGEFSESRRMNGMPFTPP