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Spg029670 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029670
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold2:19837146..19839751
RNA-Seq ExpressionSpg029670
SyntenySpg029670
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053666.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-2343.67Show/hide
Query:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNHGD-----
        + I Y+I+++K  + AI+EM  P CSGFGWN++ KCI AEKE+FD WV+SH AAKGLLNKPFP+Y+E  +VFG+DRA+G  +   A    +  G      
Subjt:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNHGD-----

Query:  DEGDCNFQGSQDYYVPVPPVVNLNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRI
        D GD    G++D+    PPV       ARE   R T    +   P+L   +RV L ++
Subjt:  DEGDCNFQGSQDYYVPVPPVVNLNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRI

KAA0054553.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2343.09Show/hide
Query:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVPAKQAESN
        STI  +I+ MK  + A++EM GP CS FGWN++ KCI AEKEVFD W  SHSAAKGLLNK F HY+E ++VFGKD A+G        +GS+ PA   +  
Subjt:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVPAKQAESN

Query:  HGDDEGDCNFQGSQDYYVP--------VPPVVNLNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLK
          D   D NF      Y P          P+ ++N +DA     R  +   L A PELT  +R  LMRIL  +       L VP  +K
Subjt:  HGDDEGDCNFQGSQDYYVP--------VPPVVNLNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLK

TYK05687.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-2543.85Show/hide
Query:  MSTIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVPAKQAES
        +STI  +I+ +K  + AI+EM GP CSGFGWN++ KCI  EKEVFD WVKSH  AKGLLNK FPHY+E +++FGKDRA G        +GS+    + E+
Subjt:  MSTIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVPAKQAES

Query:  NHGDDEGDCNFQG--SQDYYVPVPPVVN----LNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLK
           D   D NFQ   SQ   + +  ++     L +EDA +   R  V   L   PELT  +R  LMRIL  +       L VP  +K
Subjt:  NHGDDEGDCNFQG--SQDYYVPVPPVVN----LNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLK

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]5.1e-2460.22Show/hide
Query:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVP
        + I Y+I+++K  Y AI+EM GP CSGFGWN+  KCI AEKE FD WV+SH AAKGLLNKPFP+Y++ A+VFGKDRA G        +GS+VP
Subjt:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVP

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]6.7e-2439.66Show/hide
Query:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNHGDDEGDC
        +TI  K+RS+K Q  A+SEML    SGF WNE+FKC++ E+E+FD WV+SH  AKG+ NKPFPHY++ + VFGK +A G  S  P     +   + E + 
Subjt:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNHGDDEGDC

Query:  NFQGSQDYYVPVPPVVNLNAEDAR-----EFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLKLR
           GSQD + P    +   A   +     EF RR  V   +     L +D++V L+ +L  D + TN  L+VP   + R
Subjt:  NFQGSQDYYVPVPPVVNLNAEDAR-----EFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLKLR

TrEMBL top hitse value%identityAlignment
A0A5A7UF28 Retrotransposon protein5.5e-2443.09Show/hide
Query:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVPAKQAESN
        STI  +I+ MK  + A++EM GP CS FGWN++ KCI AEKEVFD W  SHSAAKGLLNK F HY+E ++VFGKD A+G        +GS+ PA   +  
Subjt:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVPAKQAESN

Query:  HGDDEGDCNFQGSQDYYVP--------VPPVVNLNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLK
          D   D NF      Y P          P+ ++N +DA     R  +   L A PELT  +R  LMRIL  +       L VP  +K
Subjt:  HGDDEGDCNFQGSQDYYVP--------VPPVVNLNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLK

A0A5A7UHF7 Retrotransposon protein1.2e-2343.67Show/hide
Query:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNHGD-----
        + I Y+I+++K  + AI+EM  P CSGFGWN++ KCI AEKE+FD WV+SH AAKGLLNKPFP+Y+E  +VFG+DRA+G  +   A    +  G      
Subjt:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNHGD-----

Query:  DEGDCNFQGSQDYYVPVPPVVNLNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRI
        D GD    G++D+    PPV       ARE   R T    +   P+L   +RV L ++
Subjt:  DEGDCNFQGSQDYYVPVPPVVNLNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRI

A0A5A7UR77 Retrotransposon protein1.6e-2345.74Show/hide
Query:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNHGD-----
        + I  +I+++K  + AI+EM GP CSGFGWN++ KCI AEKE+FD WV+SH AAKGLLNKPFP+Y+E  +VFG+DRA+G  +   A    +  G      
Subjt:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNHGD-----

Query:  DEGDCNFQGSQDYYVPVPPVVNLNAEDAR
        D GD    G++D+       ++L+ +D R
Subjt:  DEGDCNFQGSQDYYVPVPPVVNLNAEDAR

A0A5D3C1J4 Retrotransposon protein5.9e-2643.85Show/hide
Query:  MSTIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVPAKQAES
        +STI  +I+ +K  + AI+EM GP CSGFGWN++ KCI  EKEVFD WVKSH  AKGLLNK FPHY+E +++FGKDRA G        +GS+    + E+
Subjt:  MSTIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASG--------LGSSVPAKQAES

Query:  NHGDDEGDCNFQG--SQDYYVPVPPVVN----LNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLK
           D   D NFQ   SQ   + +  ++     L +EDA +   R  V   L   PELT  +R  LMRIL  +       L VP  +K
Subjt:  NHGDDEGDCNFQG--SQDYYVPVPPVVN----LNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLK

A0A5D3C1M0 Retrotransposon protein1.2e-2348.53Show/hide
Query:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNH--GDDEG
        STI  +I+ MK  + A++EM GP CSGFGWN++ KCI  EKE+FD WVKSH AAKGLLNK F HY+E ++VFGKDRA+G G +       SN   G D G
Subjt:  STIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNH--GDDEG

Query:  DCNFQGSQDYYVPVPPVVNLNAEDAREFKRRDTVSE
          +     D+     P +N++ +D  E  R   VSE
Subjt:  DCNFQGSQDYYVPVPPVVNLNAEDAREFKRRDTVSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein7.4e-0525Show/hide
Query:  KIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFG
        + +S++ Q+ AI  +L     GF W+ + + + A+  V+  ++K+H  A+  + +P P+Y++   + G
Subjt:  KIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFG

AT4G02210.2 unknown protein7.4e-0525Show/hide
Query:  KIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFG
        + +S++ Q+ AI  +L     GF W+ + + + A+  V+  ++K+H  A+  + +P P+Y++   + G
Subjt:  KIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACGATAGGCTACAAGATACGATCCATGAAACACCAGTACGGTGCAATATCGGAGATGTTGGGTCCAGGTTGTAGTGGGTTTGGGTGGAATGAGAAGTTCAAATG
TATTGAAGCTGAGAAGGAAGTGTTTGATGCATGGGTTAAGTCCCACTCTGCTGCAAAAGGACTCCTCAACAAGCCATTTCCTCACTACGAGGAACCGGCGTTCGTGTTCG
GGAAGGATCGAGCAAGTGGATTGGGGAGTTCCGTTCCAGCGAAACAAGCAGAAAGCAATCATGGGGACGATGAGGGTGATTGCAACTTTCAAGGATCGCAAGATTATTAC
GTCCCAGTGCCTCCAGTGGTTAATCTCAACGCCGAGGACGCAAGGGAGTTTAAGCGTCGTGACACAGTGTCCGAGATGCTCCTGGCCCAGCCGGAGCTGACAGATGACGA
GAGAGTGGCTCTAATGCGTATTCTCTTCGCAGACCCGAAAATGACAAACATGATGCTTTCTGTCCCACCTCCCCTAAAACTTCGATTACTACGAGGTCCGCGACGGAGGC
TTTTAGCCAATTCAAAGCTTAAACGAGCGAAACCGGAGCAAATTGAACTATTTTCCCAAAGCCAAGCGTCCAGACTCTTGTTGATGGCGTCTCAACGCTCTGCAGACTTC
AATTCCAAGCCAAAAACTGAAGAGACGAGCATCAAAATGCTGGCCAACGCTATGCAAAACTCTTCAAACTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAACGATAGGCTACAAGATACGATCCATGAAACACCAGTACGGTGCAATATCGGAGATGTTGGGTCCAGGTTGTAGTGGGTTTGGGTGGAATGAGAAGTTCAAATG
TATTGAAGCTGAGAAGGAAGTGTTTGATGCATGGGTTAAGTCCCACTCTGCTGCAAAAGGACTCCTCAACAAGCCATTTCCTCACTACGAGGAACCGGCGTTCGTGTTCG
GGAAGGATCGAGCAAGTGGATTGGGGAGTTCCGTTCCAGCGAAACAAGCAGAAAGCAATCATGGGGACGATGAGGGTGATTGCAACTTTCAAGGATCGCAAGATTATTAC
GTCCCAGTGCCTCCAGTGGTTAATCTCAACGCCGAGGACGCAAGGGAGTTTAAGCGTCGTGACACAGTGTCCGAGATGCTCCTGGCCCAGCCGGAGCTGACAGATGACGA
GAGAGTGGCTCTAATGCGTATTCTCTTCGCAGACCCGAAAATGACAAACATGATGCTTTCTGTCCCACCTCCCCTAAAACTTCGATTACTACGAGGTCCGCGACGGAGGC
TTTTAGCCAATTCAAAGCTTAAACGAGCGAAACCGGAGCAAATTGAACTATTTTCCCAAAGCCAAGCGTCCAGACTCTTGTTGATGGCGTCTCAACGCTCTGCAGACTTC
AATTCCAAGCCAAAAACTGAAGAGACGAGCATCAAAATGCTGGCCAACGCTATGCAAAACTCTTCAAACTCGTAG
Protein sequenceShow/hide protein sequence
MSTIGYKIRSMKHQYGAISEMLGPGCSGFGWNEKFKCIEAEKEVFDAWVKSHSAAKGLLNKPFPHYEEPAFVFGKDRASGLGSSVPAKQAESNHGDDEGDCNFQGSQDYY
VPVPPVVNLNAEDAREFKRRDTVSEMLLAQPELTDDERVALMRILFADPKMTNMMLSVPPPLKLRLLRGPRRRLLANSKLKRAKPEQIELFSQSQASRLLLMASQRSADF
NSKPKTEETSIKMLANAMQNSSNS