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Spg029761 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029761
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold6:12905932..12908131
RNA-Seq ExpressionSpg029761
SyntenySpg029761
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022138036.1 uncharacterized protein LOC111009292 [Momordica charantia]7.1e-1048.53Show/hide
Query:  LKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQRRPRQRQ
        L K+ +++K+ P  R K +YCLFH DHGH+T++C  LK+E+EGLIR GYLKE+    +A Q     +Q
Subjt:  LKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQRRPRQRQ

XP_022151636.1 uncharacterized protein LOC111019544 [Momordica charantia]1.2e-0950.82Show/hide
Query:  LKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQ
        L K+ +++K++P+ R K +YCLFHRDHGH+T +C  LK+E+EG I  GYLKE+    +A Q
Subjt:  LKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQ

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]3.2e-1044.09Show/hide
Query:  LKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQRRPRQRQGWTSIGNPLRTKTDSPMVEAEAKAE
        L K+ +++K+ P  R K QY LFHRDHGH+T++C  LK+E+EGLIR+GYLKE+    +A Q       G     +P+R +  + M E  AK E
Subjt:  LKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQRRPRQRQGWTSIGNPLRTKTDSPMVEAEAKAE

XP_022158093.1 uncharacterized protein LOC111024662 [Momordica charantia]4.9e-1143.27Show/hide
Query:  LKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEF------TTKAEADQRRPRQRQGWTSIGNP----LRTKTDSPMVEAEAK---AEP
        +K++P+ R K +YCLFHRDHGH+T++C  LK+E+EGLIR GYLKE+      T  +E D + P  ++  T  G P    L  K  + M EA A     + 
Subjt:  LKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEF------TTKAEADQRRPRQRQGWTSIGNP----LRTKTDSPMVEAEAK---AEP

Query:  YHTS
        YH S
Subjt:  YHTS

XP_038701827.1 uncharacterized protein LOC119998550 [Tripterygium wilfordii]1.9e-1053.97Show/hide
Query:  KFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQRRPR
        K+ KK+++  + R   +YCLFH+DHGH T  C  LKDEIEGLIR GYLK+FT+  E  +RR +
Subjt:  KFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQRRPR

TrEMBL top hitse value%identityAlignment
A0A2N9GG66 RNase H domain-containing protein8.4e-0937.8Show/hide
Query:  KYMGAEELLKSKKSEREHKRSSSSD--HNSRKDKKPRT---------DERGRGRPDQGDYLKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDE
        +YM  EE L+++ S    KR +  +  H+   + KP+T         D   RG   + D   K+  KL +NPD + K +YC FH+DHGHST NC  LK +
Subjt:  KYMGAEELLKSKKSEREHKRSSSSD--HNSRKDKKPRT---------DERGRGRPDQGDYLKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDE

Query:  IEGLIRNGYLKEFTTKAEADQRRPRQR
        IE LI+ G L+ F  K + D   P  R
Subjt:  IEGLIRNGYLKEFTTKAEADQRRPRQR

A0A2N9H9I9 Ribonuclease H5.4e-0841.23Show/hide
Query:  EELLKSKKSEREHKRSSSSDHNSRKDKKPRTDERGRGRPDQGDYLKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEF---
        +E    K+ E E +R  SS +   K   PR D++      Q D   K+  KL+SNP  R K  YC FHRDHGH+T +C  LK +IE LIR G L++F   
Subjt:  EELLKSKKSEREHKRSSSSDHNSRKDKKPRTDERGRGRPDQGDYLKKFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEF---

Query:  -TTKAEADQRRPRQ
           +A  + R PRQ
Subjt:  -TTKAEADQRRPRQ

A0A2N9HV64 Ribonuclease H1.2e-0732.79Show/hide
Query:  KYMGAEELLKSKKSEREHKRSSSSDHNSRKDKKPRTDERGRGRPD----QGDYLK--KFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLI
        +YM  E+ L+++ + ++ +   +   N   + KP+  +  + R +    +GD  +  ++  KL +NPD R K +YC FHRDHGH+T +C  LK +IE LI
Subjt:  KYMGAEELLKSKKSEREHKRSSSSDHNSRKDKKPRTDERGRGRPD----QGDYLK--KFEKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLI

Query:  RNGYLKEFTTKAEADQRRPRQR
        + G L+ F  + + + R P+ R
Subjt:  RNGYLKEFTTKAEADQRRPRQR

A0A6J1DWY0 uncharacterized protein LOC1110252932.4e-0831.21Show/hide
Query:  KYMGAEELLKS------KKSEREHKRSSSSDHNSRKDKKPRTDERGRGRPDQ-----------------GDYLKKFEKKLKSNPDNRDKSQYCLFHRDHG
        +YM A E   S      K+++ + +RS      SR +K+ R+ ++   R  +                    L K+ +++K++   R K +YCLFHRDHG
Subjt:  KYMGAEELLKS------KKSEREHKRSSSSDHNSRKDKKPRTDERGRGRPDQ-----------------GDYLKKFEKKLKSNPDNRDKSQYCLFHRDHG

Query:  HSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQR----RPRQRQGWTSIGNPLRTKT
        H+T++C  LK+E+EGLIR GYLKE+  + +A Q     +   R+  T +G P+  ++
Subjt:  HSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQR----RPRQRQGWTSIGNPLRTKT

A0A6J1DZ52 uncharacterized protein LOC1110256127.1e-0833.94Show/hide
Query:  KAKARAAEAEARL-KYMGAEEL------LKSKKSEREHKRSSSSDHNSRKDKKPRTDERGRGRPDQGDYLKKFEK-------------------------
        K  +  AEA +R  KYM AEE       L+ K+++++ +RS     +S+ +K+ R          Q D  +KFEK                         
Subjt:  KAKARAAEAEARL-KYMGAEEL------LKSKKSEREHKRSSSSDHNSRKDKKPRTDERGRGRPDQGDYLKKFEK-------------------------

Query:  KLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQRRPRQRQGWT
         +K+ P+ R K +YCLFHRDHGH+T +C  LK+E+EGLIR GYLKE+    +A   R    +  T
Subjt:  KLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQRRPRQRQGWT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGGCCCGCTTGTGCGGGCCGAGTTCTTTCGGCTCCGTTCAATCCCTACCGCCTCTGGCCGCCCCGGTTTCGCCCACATCGGAGGCGGTGCGGCTAGCACCACACC
GGTGTGCAGGTTTACTCTTTTGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGATGGAGAAGAGAAATCAAGACATAAACA
CAGAAAATGACCGCCACCAGCGAAGGTCACTGGAAAAAGGTCGAGATCGGCCTCGGACCGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCT
GATCTAAAATTTGTTGCTCTCGAAAACAAAGTAAGTGTGATGGATCATAATTTGTCCAGGATACTTCGCATCCTGGATAAACCTTGTCCTAGCACTAAAACCTATGATGA
GAGGTTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCCATGGATCACAGTGCAGAATCAGGGACGAGATCGAAGGGAAAGAAGACTGACAGCATGACCAGCAAGGTCAGGG
GGCTCAGACCTACAGATCGTGCAAATCTGAGGAGCCTAGAGCCAAGCACACTAAAGGATCGTGACCACACAGTTTCAACACCAAGCTACGGCCATACCAAGACAGACCTG
AGGAATCTGATTGAGGATAAGCGCAGAAGTGCCAAAACTGTCGAGGCCGAGGCGAGAGCTGCCAAAGCTGAAGCCAGGGCTGCTAAGGCCAAGGCTAGAGCAGCCGAGGC
CGAGGCTAGATTGAAATACATGGGTGCAGAAGAGTTGCTCAAGTCGAAGAAGTCAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACAACAGTAGGAAGGACAAGA
AGCCGCGAACAGACGAAAGAGGCAGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAAGAAGCTAAAGTCAAATCCTGACAACAGAGACAAAAGCCAGTAT
TGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGGGCTAATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGC
CGAGGCTGACCAGAGACGACCCAGGCAAAGACAAGGGTGGACCTCAATTGGAAATCCGTTGAGGACCAAGACAGACTCTCCTATGGTCGAGGCTGAGGCCAAGGCCGAGC
CCTACCACACTTCATGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGGCCCGCTTGTGCGGGCCGAGTTCTTTCGGCTCCGTTCAATCCCTACCGCCTCTGGCCGCCCCGGTTTCGCCCACATCGGAGGCGGTGCGGCTAGCACCACACC
GGTGTGCAGGTTTACTCTTTTGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGATGGAGAAGAGAAATCAAGACATAAACA
CAGAAAATGACCGCCACCAGCGAAGGTCACTGGAAAAAGGTCGAGATCGGCCTCGGACCGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCT
GATCTAAAATTTGTTGCTCTCGAAAACAAAGTAAGTGTGATGGATCATAATTTGTCCAGGATACTTCGCATCCTGGATAAACCTTGTCCTAGCACTAAAACCTATGATGA
GAGGTTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCCATGGATCACAGTGCAGAATCAGGGACGAGATCGAAGGGAAAGAAGACTGACAGCATGACCAGCAAGGTCAGGG
GGCTCAGACCTACAGATCGTGCAAATCTGAGGAGCCTAGAGCCAAGCACACTAAAGGATCGTGACCACACAGTTTCAACACCAAGCTACGGCCATACCAAGACAGACCTG
AGGAATCTGATTGAGGATAAGCGCAGAAGTGCCAAAACTGTCGAGGCCGAGGCGAGAGCTGCCAAAGCTGAAGCCAGGGCTGCTAAGGCCAAGGCTAGAGCAGCCGAGGC
CGAGGCTAGATTGAAATACATGGGTGCAGAAGAGTTGCTCAAGTCGAAGAAGTCAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACAACAGTAGGAAGGACAAGA
AGCCGCGAACAGACGAAAGAGGCAGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAAGAAGCTAAAGTCAAATCCTGACAACAGAGACAAAAGCCAGTAT
TGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGGGCTAATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGC
CGAGGCTGACCAGAGACGACCCAGGCAAAGACAAGGGTGGACCTCAATTGGAAATCCGTTGAGGACCAAGACAGACTCTCCTATGGTCGAGGCTGAGGCCAAGGCCGAGC
CCTACCACACTTCATGCTAG
Protein sequenceShow/hide protein sequence
MLGPLVRAEFFRLRSIPTASGRPGFAHIGGGAASTTPVCRFTLLQATSSPSSTNLPLVAREGQGMEKRNQDINTENDRHQRRSLEKGRDRPRTESPRPRSPLPSSREKQA
DLKFVALENKVSVMDHNLSRILRILDKPCPSTKTYDERLVRDPRKGKEPMDHSAESGTRSKGKKTDSMTSKVRGLRPTDRANLRSLEPSTLKDRDHTVSTPSYGHTKTDL
RNLIEDKRRSAKTVEAEARAAKAEARAAKAKARAAEAEARLKYMGAEELLKSKKSEREHKRSSSSDHNSRKDKKPRTDERGRGRPDQGDYLKKFEKKLKSNPDNRDKSQY
CLFHRDHGHSTRNCIQLKDEIEGLIRNGYLKEFTTKAEADQRRPRQRQGWTSIGNPLRTKTDSPMVEAEAKAEPYHTSC