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Spg029849 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029849
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTetratricopeptide-like helical
Genome locationscaffold6:11030255..11030650
RNA-Seq ExpressionSpg029849
SyntenySpg029849
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]2.5e-3369.75Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN
        MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E VTST SN Y F   G FG WRR+D  ADG H I G+ + LS+ IEK+ASN
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN

Query:  GVSSVRIMVRTIVGFLMVM
        G++SVRI+VRTI+GFLMVM
Subjt:  GVSSVRIMVRTIVGFLMVM

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]3.6e-4071.76Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN
        MSVSLEALAMAGI SNEWAMDAEEWERNE+ENDVPPHLLA  +EDDDD+NVTST SN Y F   GFF S RR+DGGA  +HC  G+L  LS+S+EK+ASN
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN

Query:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSKL
        G+SSVRI+VRTI+GFL+V  +KIISA  S +
Subjt:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSKL

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-4071.76Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN
        MSVSLEALAMAGI SNEWAMDAEEWERNE+ENDVPPHLLA  +EDDDD+NVTST SN Y F   GFF S  R+DGGAD +HC  G+L  LS+S+EK+ASN
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN

Query:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSKL
        G+SSVRI+VRTI+GFL+V  +KIISA  S +
Subjt:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSKL

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]2.8e-3770.23Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN
        MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E VTST SN Y F   G FG WRR+D  ADG   I G+ + LS+ IEK+ASN
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN

Query:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSKL
        G++SVRI+VRTI+GFLMVM MKIISAQRSK+
Subjt:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSKL

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]2.1e-2456.92Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN
        MSVSLEALAMAGIDSNEWAMDAEEWERNEME D+PPHLLA+E   DD+E+  ST     +F AT    S  RKD G  GV C   +++ L +  EK+  N
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN

Query:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSK
         +SS+ I+   +VGFLM M +KII+++RSK
Subjt:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSK

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein1.6e-0949.51Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEND--VPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEK
        M VSLEALAMAGIDSNEWAMDAEEW+ N  +MEND  +PPHLLA    D+D+EN+          AA     S  RKD G             L + +EK
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEND--VPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEK

Query:  KAS
        +AS
Subjt:  KAS

A0A0A0KWE7 Uncharacterized protein8.3e-3567.91Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDD-DENVTSTASNDYEFAATGFFGSWRRKDGGADG--VHCISGMLFCLSRSIEKK
        MSVSLEALAMAGIDSNEWAMDAEEWERNE++  VPPHLLA+EE+D+D DE+VT++  ++Y F   G F  WR +D  ADG   H I G+   LS+ IEK+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDD-DENVTSTASNDYEFAATGFFGSWRRKDGGADG--VHCISGMLFCLSRSIEKK

Query:  ASNGVSSVRIMVRTIVGFLMVMAMKIISAQRSKL
        ASNG+SSVRI+VRTI+GFLMVM MKIISAQRSK+
Subjt:  ASNGVSSVRIMVRTIVGFLMVMAMKIISAQRSKL

A0A5A7TS68 Tetratricopeptide-like helical1.2e-3369.75Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN
        MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E VTST SN Y F   G FG WRR+D  ADG H I G+ + LS+ IEK+ASN
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN

Query:  GVSSVRIMVRTIVGFLMVM
        G++SVRI+VRTI+GFLMVM
Subjt:  GVSSVRIMVRTIVGFLMVM

A0A5D3CZU0 Tetratricopeptide-like helical1.4e-3770.23Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN
        MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E VTST SN Y F   G FG WRR+D  ADG   I G+ + LS+ IEK+ASN
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN

Query:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSKL
        G++SVRI+VRTI+GFLMVM MKIISAQRSK+
Subjt:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSKL

A0A6J1FX98 uncharacterized protein LOC1114478801.0e-2456.92Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN
        MSVSLEALAMAGIDSNEWAMDAEEWERNEME D+PPHLLA+E   DD+E+  ST     +F AT    S  RKD G  GV C   +++ L +  EK+  N
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASN

Query:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSK
         +SS+ I+   +VGFLM M +KII+++RSK
Subjt:  GVSSVRIMVRTIVGFLMVMAMKIISAQRSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein2.6e-0450.98Show/hide
Query:  LEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLA-----EEEEDDDDEN
        +EALAMAG+D  EW +  EEWE    E+ VP HLLA     EE+E+D  +N
Subjt:  LEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLA-----EEEEDDDDEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCTAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGGAACGAAATGGAGAACGACGTTCCGCCGCA
TTTGTTAGCGGAGGAAGAGGAAGACGACGACGACGAAAACGTAACGAGCACTGCAAGTAACGACTATGAGTTTGCTGCCACCGGATTCTTCGGCAGCTGGCGCCGGAAAG
ATGGCGGAGCTGATGGTGTCCATTGCATCTCGGGCATGTTGTTTTGTTTGAGCAGAAGCATAGAGAAGAAGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGA
ACTATTGTAGGGTTTCTGATGGTGATGGCCATGAAGATAATTAGTGCTCAAAGATCCAAGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCTAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGGAACGAAATGGAGAACGACGTTCCGCCGCA
TTTGTTAGCGGAGGAAGAGGAAGACGACGACGACGAAAACGTAACGAGCACTGCAAGTAACGACTATGAGTTTGCTGCCACCGGATTCTTCGGCAGCTGGCGCCGGAAAG
ATGGCGGAGCTGATGGTGTCCATTGCATCTCGGGCATGTTGTTTTGTTTGAGCAGAAGCATAGAGAAGAAGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGA
ACTATTGTAGGGTTTCTGATGGTGATGGCCATGAAGATAATTAGTGCTCAAAGATCCAAGTTGTGA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVR
TIVGFLMVMAMKIISAQRSKL