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Spg029902 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029902
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:9101536..9102728
RNA-Seq ExpressionSpg029902
SyntenySpg029902
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]2.0e-0934.65Show/hide
Query:  KLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIR---MIHDTCAQNQIPLEVESDSMEVVSALTGSSLDLSEVKVLTDA
        KLNS ASW+++ G+ G+ WV+HDS+GS IC    ++  KW +K LE +A++EG++   +I +T + +  P+      +E+   L  + +DL E+  + D 
Subjt:  KLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIR---MIHDTCAQNQIPLEVESDSMEVVSALTGSSLDLSEVKVLTDA

Query:  V
        +
Subjt:  V

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.6e-0935.71Show/hide
Query:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSALTGSSLDLS
        WS P +N WKLN+DASW++++   G+GW++ D  G ++     +I  K  I +LE   I+ G++ I+    Q++ P+ +ESDS+EV+  +    +DL+
Subjt:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSALTGSSLDLS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-0931.88Show/hide
Query:  QRIDYHVGAMEPSWSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVV
        +RI+ + GA    W PP SN WKLN++A+W       G+GW++ D  G +I      I  +  I  LE  AI EG+R I     ++  P+ +ESDS+E +
Subjt:  QRIDYHVGAMEPSWSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVV

Query:  SALTGSSLDLSEVKVLTDAVRWPQSWKVFRSAIVVGLR
          L     D +E+  L + +     W++ +   +V +R
Subjt:  SALTGSSLDLSEVKVLTDAVRWPQSWKVFRSAIVVGLR

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]8.5e-0838.89Show/hide
Query:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSAL
        W PP SN WKLN+DA+W       G+GW++ D  G +I      I  +  I  LE  AI EG+R I     ++  P+ +ESDS+E +  L
Subjt:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSAL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.9e-0932.87Show/hide
Query:  QRIDYHVGAMEPSWSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMI-HDTCAQNQ----IPLEVESD
        +RI  + GA    W PP SN WKLN+DA+W       G+GW++ D  G +I      I  +  I  LE  AI EG+R I  + C   Q     P+ +ESD
Subjt:  QRIDYHVGAMEPSWSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMI-HDTCAQNQ----IPLEVESD

Query:  SMEVVSALTGSSLDLSEVKVLTDAVRWPQSWKVFRSAIVVGLR
        S+E +  L     D +E+  L + +     W++     +V +R
Subjt:  SMEVVSALTGSSLDLSEVKVLTDAVRWPQSWKVFRSAIVVGLR

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.8e-1031.88Show/hide
Query:  QRIDYHVGAMEPSWSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVV
        +RI+ + GA    W PP SN WKLN++A+W       G+GW++ D  G +I      I  +  I  LE  AI EG+R I     ++  P+ +ESDS+E +
Subjt:  QRIDYHVGAMEPSWSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVV

Query:  SALTGSSLDLSEVKVLTDAVRWPQSWKVFRSAIVVGLR
          L     D +E+  L + +     W++ +   +V +R
Subjt:  SALTGSSLDLSEVKVLTDAVRWPQSWKVFRSAIVVGLR

A0A6J1CQG0 uncharacterized protein LOC1110132167.5e-1035.71Show/hide
Query:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSALTGSSLDLS
        WS P +N WKLN+DASW++++   G+GW++ D  G ++     +I  K  I +LE   I+ G++ I+    Q++ P+ +ESDS+EV+  +    +DL+
Subjt:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSALTGSSLDLS

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.1e-0838.89Show/hide
Query:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSAL
        W PP SN WKLN+DA+W       G+GW++ D  G +I      I  +  I  LE  AI EG+R I     ++  P+ +ESDS+E +  L
Subjt:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSAL

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X24.1e-0838.89Show/hide
Query:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSAL
        W PP SN WKLN+DA+W       G+GW++ D  G +I      I  +  I  LE  AI EG+R I     ++  P+ +ESDS+E +  L
Subjt:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEVESDSMEVVSAL

A0A6J1DSV1 uncharacterized protein LOC1110236082.9e-0932.87Show/hide
Query:  QRIDYHVGAMEPSWSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMI-HDTCAQNQ----IPLEVESD
        +RI  + GA    W PP SN WKLN+DA+W       G+GW++ D  G +I      I  +  I  LE  AI EG+R I  + C   Q     P+ +ESD
Subjt:  QRIDYHVGAMEPSWSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMI-HDTCAQNQ----IPLEVESD

Query:  SMEVVSALTGSSLDLSEVKVLTDAVRWPQSWKVFRSAIVVGLR
        S+E +  L     D +E+  L + +     W++     +V +R
Subjt:  SMEVVSALTGSSLDLSEVKVLTDAVRWPQSWKVFRSAIVVGLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.7e-0429.17Show/hide
Query:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEV-ESDSMEVVSALTGSSL
        W PP     K N+DA+WN    R G+GWV+ +  G +   +W+       +KS+   A LE +R    + ++ Q    + ESDS  ++  L    +
Subjt:  WSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAILEGIRMIHDTCAQNQIPLEV-ESDSMEVVSALTGSSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACTCTAGAGACGAAATTATCTGGCATTCGGACAAGAAAGGAAAGAGTGGAACCCTATGGATTTTTGGAGCTGGTTGGTGGAGAATTTAAGCAAGGACGAGTTGG
CCAAAGGATCGATTATCATGTGGGGGCTATGGAACCGTCATGGTCTCCCCCGAAGTCTAACCACTGGAAGCTGAACTCTGATGCTTCCTGGAATGATAAGAAAGGAAGAA
AAGGGTTAGGTTGGGTGGTACATGACTCGGTAGGATCCCTGATCTGTTTCAGATGGCTTCAAATTCACCATAAATGGACAATCAAATCCTTGGAATTCAGAGCCATTTTA
GAAGGGATTAGAATGATCCACGATACCTGTGCGCAAAACCAAATTCCGCTGGAGGTGGAGTCGGATTCCATGGAAGTTGTCTCGGCCTTAACTGGATCGTCTTTAGACCT
GTCGGAAGTGAAAGTTCTCACCGATGCTGTAAGATGGCCTCAAAGCTGGAAGGTGTTTCGTTCGGCCATTGTAGTAGGTCTGCGAACTCAGATGCCCACTGCATCGCTAA
GTTTGCTTGTAATTTTGTTTGTAGTTTTGGTTCAGATGAAGGTTCATCTGAAAACTCTTCACAGGAAAGAGGGCAATTTTTTTGGGCTCCGCATTTTCCCAGGTGGTTCT
TTCCTGCTCTTTATGAGGGCAATGGTGGTGGAATTCACTCTCACTTTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAACTCTAGAGACGAAATTATCTGGCATTCGGACAAGAAAGGAAAGAGTGGAACCCTATGGATTTTTGGAGCTGGTTGGTGGAGAATTTAAGCAAGGACGAGTTGG
CCAAAGGATCGATTATCATGTGGGGGCTATGGAACCGTCATGGTCTCCCCCGAAGTCTAACCACTGGAAGCTGAACTCTGATGCTTCCTGGAATGATAAGAAAGGAAGAA
AAGGGTTAGGTTGGGTGGTACATGACTCGGTAGGATCCCTGATCTGTTTCAGATGGCTTCAAATTCACCATAAATGGACAATCAAATCCTTGGAATTCAGAGCCATTTTA
GAAGGGATTAGAATGATCCACGATACCTGTGCGCAAAACCAAATTCCGCTGGAGGTGGAGTCGGATTCCATGGAAGTTGTCTCGGCCTTAACTGGATCGTCTTTAGACCT
GTCGGAAGTGAAAGTTCTCACCGATGCTGTAAGATGGCCTCAAAGCTGGAAGGTGTTTCGTTCGGCCATTGTAGTAGGTCTGCGAACTCAGATGCCCACTGCATCGCTAA
GTTTGCTTGTAATTTTGTTTGTAGTTTTGGTTCAGATGAAGGTTCATCTGAAAACTCTTCACAGGAAAGAGGGCAATTTTTTTGGGCTCCGCATTTTCCCAGGTGGTTCT
TTCCTGCTCTTTATGAGGGCAATGGTGGTGGAATTCACTCTCACTTTTTTTTAG
Protein sequenceShow/hide protein sequence
MRTLETKLSGIRTRKERVEPYGFLELVGGEFKQGRVGQRIDYHVGAMEPSWSPPKSNHWKLNSDASWNDKKGRKGLGWVVHDSVGSLICFRWLQIHHKWTIKSLEFRAIL
EGIRMIHDTCAQNQIPLEVESDSMEVVSALTGSSLDLSEVKVLTDAVRWPQSWKVFRSAIVVGLRTQMPTASLSLLVILFVVLVQMKVHLKTLHRKEGNFFGLRIFPGGS
FLLFMRAMVVEFTLTFF