; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029921 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029921
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold6:13358090..13358678
RNA-Seq ExpressionSpg029921
SyntenySpg029921
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW16209.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]5.3e-3944.32Show/hide
Query:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWKDSV------------------VEGQ
        MKIISWNVRGLG+R+KR +IKD + S NPD+V++QE++    DRR V SVW+ R+  W+AL A  ++GGIL++W   +                  ++G 
Subjt:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWKDSV------------------VEGQ

Query:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
           WI+ VYGP +   R  F  EL D+ GL   +WC+ GDFN+IR S E++  S+ T SM  F+ FI   EL+DPP+ N  F+WS
Subjt:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

RVW91468.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]7.0e-3944.32Show/hide
Query:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWKDSV------------------VEGQ
        MKIISWNVRGLG+R+KR +IKD + S NPD+V++QE++    DRR V SVW+ R+  W+AL A  ++GGIL++W   +                  ++G 
Subjt:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWKDSV------------------VEGQ

Query:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
           WI+ VYGP +   R  F  EL D+ GL   +WC+ GDFN+IR S E++  S+ T SM  F+ FI   EL+DPP+ N  F+WS
Subjt:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

RVW94236.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.2e-3845.41Show/hide
Query:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMW------KDSVVEGQH--------EG-
        MKIISWNVRGLG+R+KR ++KD + S NPD+V++QE++    DRR V SVW+ R+  W+AL A  ++GGIL++W      ++ VV G          +G 
Subjt:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMW------KDSVVEGQH--------EG-

Query:  ---WITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
           WI+ VYGP +   R  F  EL D+ GL   +WC+ GDFN+IR S E++  S+ T SM  F+ FI   EL+DPP+ N  F+WS
Subjt:  ---WITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

RVX11280.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.2e-3845.41Show/hide
Query:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMW------KDSVVEGQH--------EG-
        MKIISWNVRGLG+R+KR ++KD + S NPD+V++QE++    DRR V SVW+ R+  W+AL A  ++GGIL++W      ++ VV G          +G 
Subjt:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMW------KDSVVEGQH--------EG-

Query:  ---WITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
           WI+ VYGP +   R  F  EL D+ GL   +WC+ GDFN+IR S E++  S+ T SM  F+ FI   EL+DPP+ N  F+WS
Subjt:  ---WITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]7.0e-3945.95Show/hide
Query:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMW---KDSVVE---------------GQ
        M I++WNVRGLG+ SKRA IKD I S  PD+VIL E++S+ ++ + +KS+WSS  IAW +LDA  ++GGI+++W     S VE                 
Subjt:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMW---KDSVVE---------------GQ

Query:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
           W+TGVY P   K+R  F QEL DL GLC  IW +  DFN+ RWS E  +A+     M KFN FI+ + LIDP M+NG+++WS
Subjt:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

TrEMBL top hitse value%identityAlignment
A0A438BYX6 Transposon TX1 uncharacterized 149 kDa protein2.6e-3944.32Show/hide
Query:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWKDSV------------------VEGQ
        MKIISWNVRGLG+R+KR +IKD + S NPD+V++QE++    DRR V SVW+ R+  W+AL A  ++GGIL++W   +                  ++G 
Subjt:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWKDSV------------------VEGQ

Query:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
           WI+ VYGP +   R  F  EL D+ GL   +WC+ GDFN+IR S E++  S+ T SM  F+ FI   EL+DPP+ N  F+WS
Subjt:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

A0A438I435 Transposon TX1 uncharacterized 149 kDa protein3.4e-3944.32Show/hide
Query:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWKDSV------------------VEGQ
        MKIISWNVRGLG+R+KR +IKD + S NPD+V++QE++    DRR V SVW+ R+  W+AL A  ++GGIL++W   +                  ++G 
Subjt:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWKDSV------------------VEGQ

Query:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
           WI+ VYGP +   R  F  EL D+ GL   +WC+ GDFN+IR S E++  S+ T SM  F+ FI   EL+DPP+ N  F+WS
Subjt:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

A0A6J1CVN2 uncharacterized protein LOC1110146573.4e-3945.95Show/hide
Query:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMW---KDSVVE---------------GQ
        M I++WNVRGLG+ SKRA IKD I S  PD+VIL E++S+ ++ + +KS+WSS  IAW +LDA  ++GGI+++W     S VE                 
Subjt:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMW---KDSVVE---------------GQ

Query:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
           W+TGVY P   K+R  F QEL DL GLC  IW +  DFN+ RWS E  +A+     M KFN FI+ + LIDP M+NG+++WS
Subjt:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

A0A803P8A0 Uncharacterized protein2.8e-4147.03Show/hide
Query:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWK-------DSVV-----------EGQ
        MKI++WN+RG G + KRA IK  IC  NPD+VILQE +   VDRR + S+W SR  AW+ L AI  +GG L++W        DS+V           EG+
Subjt:  MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWK-------DSVV-----------EGQ

Query:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
           W +GVYGPC+YK R  F  EL  L  +C   WC+ GDFN+ R   E+LN+S+STRSM+ F+  I   +LIDP + NG F+WS
Subjt:  HEGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

A0A803QEA6 Uncharacterized protein5.2e-4045.65Show/hide
Query:  KIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWK-------DSVV-----------EGQH
        +I++WN+RG G + KR  IK  IC  NPDLVILQE +   VDRR + S+W SR  AW+ + AI  +GG L++W        DS+V           EG+ 
Subjt:  KIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWK-------DSVV-----------EGQH

Query:  EGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS
          W +GVYGPC+YK R +F  EL  L  +C   WC+AGDFN+ R   E+LN+S+ TRSM+ F+  I   +LIDP + NG F+WS
Subjt:  EGWITGVYGPCNYKERGQFLQELNDLQGLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATAATCTCTTGGAACGTAAGAGGGCTGGGAGCGAGGTCTAAAAGAGCCCTTATAAAAGACCTCATTTGCAGTCATAATCCAGATTTAGTGATTTTGCAAGAGTC
TAGATCGAACCAAGTAGACAGAAGGCTAGTGAAATCTGTTTGGAGCTCCAGACATATAGCGTGGTTAGCCTTGGATGCTATCAACTCGACAGGGGGTATTCTAGTTATGT
GGAAGGATTCAGTGGTTGAGGGGCAACATGAAGGCTGGATTACAGGGGTGTATGGACCGTGTAACTACAAGGAAAGAGGTCAGTTTTTACAAGAGCTGAACGATCTTCAG
GGTTTGTGCCAGGGTATCTGGTGTATTGCGGGTGATTTCAACATGATTAGATGGTCCAAGGAGAGGCTTAATGCTAGTAACTCTACTAGAAGCATGGAAAAATTCAACCG
GTTCATTGAATCTTCAGAGCTCATAGATCCGCCCATGTCTAATGGGGAATTTTCCTGGTCTAGAAGGGGGAAAGAGTGGCGGCATCCAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGATAATCTCTTGGAACGTAAGAGGGCTGGGAGCGAGGTCTAAAAGAGCCCTTATAAAAGACCTCATTTGCAGTCATAATCCAGATTTAGTGATTTTGCAAGAGTC
TAGATCGAACCAAGTAGACAGAAGGCTAGTGAAATCTGTTTGGAGCTCCAGACATATAGCGTGGTTAGCCTTGGATGCTATCAACTCGACAGGGGGTATTCTAGTTATGT
GGAAGGATTCAGTGGTTGAGGGGCAACATGAAGGCTGGATTACAGGGGTGTATGGACCGTGTAACTACAAGGAAAGAGGTCAGTTTTTACAAGAGCTGAACGATCTTCAG
GGTTTGTGCCAGGGTATCTGGTGTATTGCGGGTGATTTCAACATGATTAGATGGTCCAAGGAGAGGCTTAATGCTAGTAACTCTACTAGAAGCATGGAAAAATTCAACCG
GTTCATTGAATCTTCAGAGCTCATAGATCCGCCCATGTCTAATGGGGAATTTTCCTGGTCTAGAAGGGGGAAAGAGTGGCGGCATCCAAAATAG
Protein sequenceShow/hide protein sequence
MKIISWNVRGLGARSKRALIKDLICSHNPDLVILQESRSNQVDRRLVKSVWSSRHIAWLALDAINSTGGILVMWKDSVVEGQHEGWITGVYGPCNYKERGQFLQELNDLQ
GLCQGIWCIAGDFNMIRWSKERLNASNSTRSMEKFNRFIESSELIDPPMSNGEFSWSRRGKEWRHPK