CuGenDBv2

Gene ID	Spg029928
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	1-deoxy-D-xylulose-5-phosphate synthase
Genome location	scaffold6:12357265..12358511
RNA-Seq Expression	Spg029928
Synteny	Spg029928
Gene Ontology terms	GO:0016114 - terpenoid biosynthetic process (biological process) GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity (molecular function)
InterPro domains	IPR005477 - Deoxyxylulose-5-phosphate synthase IPR009014 - Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II IPR033248 - Transketolase, C-terminal domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8695993.1 putative 1-deoxy-D-xylulose-5-phosphate synthase 2 [Hibiscus syriacus]

4.2e-20

49.22

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRI++EGNRVAILG  SIVQQC+E A +LRSR   IT+ DARFCKPLD                                               T
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
        +LIKQLAN+HEIL TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

KAE8704074.1 putative 1-deoxy-D-xylulose-5-phosphate synthase 2 [Hibiscus syriacus]

1.2e-19

49.22

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRI++EG RVAILG  SIVQQCIE A +LRS+   IT+ DARFCKPLD                                               T
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
        NLIKQLAN+HEIL TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

KAG5241555.1 1-deoxy-D-xylulose-5-phosphate synthase [Salix suchowensis]

1.2e-19

48.44

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRIL+EGNRVAILG  SIVQQC E A +LR++G S+T+VDARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
        NLI+QLA +HEIL TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

XP_022136899.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Momordica charantia]

3.8e-21

51.56

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGR+LLEGN VAILG  SIVQQCIE A IL++RGTSIT+VDARFCKPLD                                               T
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
         LIKQLA QHEIL TVEE SIGGFG+HV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

XP_039009619.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Hibiscus syriacus]

4.2e-20

49.22

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRI++EGNRVAILG  SIVQQC+E A +LRSR   IT+ DARFCKPLD                                               T
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
        +LIKQLAN+HEIL TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

TrEMBL top hits

e value

%identity

Alignment

A0A6A2ZW63 1-deoxy-D-xylulose-5-phosphate synthase

2.0e-20

49.22

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRI++EGNRVAILG  SIVQQC+E A +LRSR   IT+ DARFCKPLD                                               T
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
        +LIKQLAN+HEIL TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

A0A6A3AHN3 1-deoxy-D-xylulose-5-phosphate synthase

5.9e-20

49.22

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRI++EG RVAILG  SIVQQCIE A +LRS+   IT+ DARFCKPLD                                               T
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
        NLIKQLAN+HEIL TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

A0A6J1C5M2 1-deoxy-D-xylulose-5-phosphate synthase

1.8e-21

51.56

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGR+LLEGN VAILG  SIVQQCIE A IL++RGTSIT+VDARFCKPLD                                               T
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
         LIKQLA QHEIL TVEE SIGGFG+HV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

A0A6N2LBQ5 1-deoxy-D-xylulose-5-phosphate synthase

2.0e-20

48.44

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRIL+EGNRVAILG  SIVQQC+E A +LR++G S+T+VDARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
        NLI+QLA +HEIL TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

A0A6N2M436 1-deoxy-D-xylulose-5-phosphate synthase

2.0e-20

48.44

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRIL+EGNRVAILG  SIVQQC+E A +LR++G S+T+VDARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
        NLI+QLA +HEIL TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

SwissProt top hits

e value

%identity

Alignment

O22567 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic

1.7e-16

38.28

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        ++GKGR+LLEG RVA+LG  S VQ C+  A ++   G  +T+ DARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
         LI++LA+ HE+L TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

O78328 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

3.4e-17

39.53

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        ++GKGRIL+EG RVA+LG  S VQ C+  A +L SRG  +T+ DARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHVL
         LI+ LA  HE+L TVE+ SIGGFGSHV+
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHVL

Q38854 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1.3e-16

40.31

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRIL EG RVA+LG  S VQ C+  A +L  RG ++T+ DARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHVL
         LI+ LA  HE+L TVEE SIGGFGSHV+
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHVL

Q6YU51 Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

7.6e-17

38.28

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        ++GKGR+L+ GNRVA+LG  ++VQ C++ A+ L+  G  +T+ DARFCKPLD                                               T
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
         LI++LA +HE+L TVEE SIGGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

Q8UHD7 1-deoxy-D-xylulose-5-phosphate synthase

6.7e-13

34.29

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        QIGKGRI+ EG +VA+L   + + +C+  A+ L + G S T+ DARF KPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHVL--MPKSGQATH
        +LI+QLA  HE+L T+EE S+GGFG+HVL  M  +G   H
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHVL--MPKSGQATH

Arabidopsis top hits

e value

%identity

Alignment

AT3G21500.1 1-deoxy-D-xylulose 5-phosphate synthase 1

1.4e-18

41.09

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        QIG+GRIL +G RVA+LG  S VQ+C+E A +L  RG  IT+ DARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHVL
         LI+ LA  HE+L TVEE SIGGFGSHV+
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHVL

AT3G21500.2 1-deoxy-D-xylulose 5-phosphate synthase 1

1.4e-18

41.09

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        QIG+GRIL +G RVA+LG  S VQ+C+E A +L  RG  IT+ DARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHVL
         LI+ LA  HE+L TVEE SIGGFGSHV+
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHVL

AT4G15560.1 Deoxyxylulose-5-phosphate synthase

9.3e-18

40.31

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IGKGRIL EG RVA+LG  S VQ C+  A +L  RG ++T+ DARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHVL
         LI+ LA  HE+L TVEE SIGGFGSHV+
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHVL

AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3

1.4e-13

32.03

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Query:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT
        +IG+GR+L+EG  VA+LG  ++VQ C+    +L   G ++T+ DARFCKPLD                                                
Subjt:  QIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNT

Query:  NLIKQLANQHEILFTVEEASIGGFGSHV
         L++ L   H+ L TVEE  +GGFGSHV
Subjt:  NLIKQLANQHEILFTVEEASIGGFGSHV

Sequences

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CDS sequence

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ATGGAGGGATCGCAGATTGGCAAGGGGAGAATCCTGTTGGAAGGCAATCGAGTTGCCATCTTGGGGTGCAGTTCAATAGTTCAACAATGCATTGAAGTTGCGAAAATATT
GAGATCAAGAGGCACCTCCATTACACTTGTGGATGCCAGATTTTGCAAGCCATTGGACACAAACTGTTGGGAATTAGAGAGTGCAACCAAAGTCCCACATTGGCTAAACA
AGGGGATGATCATGGGATTTATAAGGGAGGATAAGTATCTCCATTGGTATGAGGCCTTTTGGGATCTATGTCGTGTCCTCGTCCCTAACACAAACCTTATCAAGCAATTG
GCAAACCAACATGAAATCCTCTTCACTGTCGAGGAAGCTTCAATTGGTGGCTTTGGATCTCATGTGTTGATGCCAAAATCTGGCCAAGCAACTCACCTATGCACTCCGAT
GCCTAAGTCAGATCAAACAGGCTTTCTAGGCGCTTGGAGGCGATCCTGGGCTGAACCGAGTGGAACTGGAGCGGACCGGGGAGTAGGGACCGAACGGAGGCGGAAGGCAC
TCGACCCACACGAAGGGCCCAATCCCGTCGACTCGCTCTCCTTCAGAGTCCGCTTCCCAATCCCGCATTGTCCTGCTTTGTCCTGCTTAGTCCTTGAATTCTGGGGTGGT
CCAGAATCACCCACAACATCATGA

mRNA sequence

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Protein sequence

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MEGSQIGKGRILLEGNRVAILGCSSIVQQCIEVAKILRSRGTSITLVDARFCKPLDTNCWELESATKVPHWLNKGMIMGFIREDKYLHWYEAFWDLCRVLVPNTNLIKQL
ANQHEILFTVEEASIGGFGSHVLMPKSGQATHLCTPMPKSDQTGFLGAWRRSWAEPSGTGADRGVGTERRRKALDPHEGPNPVDSLSFRVRFPIPHCPALSCLVLEFWGG
PESPTTS

Spg029928 (gene) of Sponge gourd (cylindrica) v1 genome