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Spg029932 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029932
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Genome locationscaffold6:13249049..13251367
RNA-Seq ExpressionSpg029932
SyntenySpg029932
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0032196 - transposition (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147768.1 uncharacterized protein LOC111016623 [Momordica charantia]2.2e-1852.56Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
        P+D YEFEV DG     VN+++KTC+C++FDYY++PCSHAIAA + +N++ + LCS  Y +E+++ AYA+ IYPLG++
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
XP_022147770.1 uncharacterized protein LOC111016625 [Momordica charantia]2.9e-1851.28Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
        P+DR+EF+V DG     VN+++KTCTC++FDY+E+PCSHAIA  ++RNI    LCS+ Y +E++++ YA+ +YPLG +
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
XP_038890792.1 uncharacterized protein LOC120080248 [Benincasa hispida]4.0e-2063.64Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGH
        P+D++EFEV DG  GG VNIH +TCTCR+FDYYE+ CSHAIAAC  RNID    CS VY ++++L AYA+ I PLGH
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGH
XP_038895917.1 uncharacterized protein LOC120084090 [Benincasa hispida]1.3e-1860.76Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHDS
        P+D++EFE+ DG   G  NIHT+ CTC +FDYYE+PCSH IAAC  +NIDP  LCS VY +ESVL AYA+ I   GH S
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHDS
XP_038904373.1 uncharacterized protein LOC120090731 [Benincasa hispida]2.4e-2062.34Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGH
        P+D+YEFEV +G   G VNIHT+TCTCR+FDYY++PCSHAIAAC  +NIDP  LCS VY ++++L AYA+ +  LGH
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGH
TrEMBL top hitse value%identityAlignment
A0A6J1D127 uncharacterized protein LOC1110166251.4e-1851.28Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
        P+DR+EF+V DG     VN+++KTCTC++FDY+E+PCSHAIA  ++RNI    LCS+ Y +E++++ YA+ +YPLG +
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
A0A6J1D278 uncharacterized protein LOC1110166231.1e-1852.56Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
        P+D YEFEV DG     VN+++KTC+C++FDYY++PCSHAIAA + +N++ + LCS  Y +E+++ AYA+ IYPLG++
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
A0A6J1DLB0 uncharacterized protein LOC1110219692.6e-1752.56Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
        P+DR+EFEV DG     VNI++KTCTC++F YYE+PCSHAIA  + RNI    LCS+ Y +++++ AY + +YPLG +
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
A0A6J1DQV1 uncharacterized protein LOC1110222992.6e-1750Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
        P+D YE+EV DG     VN+++K+CTC++FDYY++PCSHA+ A ++RN+  + LCS  Y +E++L  YA+ IYPLG +
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
A0A6J1DU12 protein FAR-RED ELONGATED HYPOCOTYL 3-like4.1e-1851.28Show/hide
Query:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
        P+DR+EFEV DG     VN+++KTCTC++FDY+E+ CSHAIA  ++RNI    LCS+ Y +E++++ YA+ +YPLG +
Subjt:  PVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49920.1 MuDR family transposase6.7e-0533.33Show/hide
Query:  GCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPL
        G V ++  TCTC EF   + PC HA+A C    I+P     + Y +E     Y+    P+
Subjt:  GCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPL
AT1G64255.1 MuDR family transposase7.9e-0632.88Show/hide
Query:  PVDRYEFEVDDGY-KGGC-VNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKL
        P+D   F+V     KG C V +   +CTC +F  Y+ PC HA+A C     +P     + Y +E +   YA +
Subjt:  PVDRYEFEVDDGY-KGGC-VNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKL
AT1G64260.1 MuDR family transposase7.9e-0636.21Show/hide
Query:  VNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPL
        V ++  TCTCR+F  Y+ PC HA+A      I+P     E Y +E     YA    P+
Subjt:  VNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACATGTATGGGTTTGTTTTGGAGGTTTGTGGAATGAGATTGGAAAAGAATATGAAGGTGGAGTGTTGAGAGGGTTTGATGTAGACACTAACATTACGTACGACCA
GTTTTTAGGACATGTGTATGAAATAAGTGAGATAAATTCAGACGAGTTCTATCTGAACCTAGGGGATGATGCAGACCCTGTTACTCATGAACATGCTGACGTCAATGGTG
GGGTCCACGACTGGGAAGATGATGGATTGGATGCACACTCTAATAGTGATGGTGGAGATGGTGGAGATGGTGAAGATGGAGAAGAAGAGATCAATGAAGTGGGTGACATG
CAACAAGTGAGAATGAATGCTCCCACTACTGAAGTTCCACCACCTCAAGAACCACGGAACAATCCTCCACTTTTGACTGAAGCACCCCATGTGCCGGTTGATAGGTATGA
GTTCGAGGTTGATGATGGATACAAGGGTGGATGTGTCAATATTCACACAAAAACGTGTACTTGTCGTGAATTTGATTACTACGAGCTCCCATGTTCGCATGCGATCGCAG
CATGCATCTACCGAAACATAGACCCCTTTCCCCTTTGCTCTGAAGTCTATCACATGGAATCTGTGTTGATGGCTTACGCAAAACTCATATATCCTCTTGGGCATGATTCT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGCCACATGTATGGGTTTGTTTTGGAGGTTTGTGGAATGAGATTGGAAAAGAATATGAAGGTGGAGTGTTGAGAGGGTTTGATGTAGACACTAACATTACGTACGACCA
GTTTTTAGGACATGTGTATGAAATAAGTGAGATAAATTCAGACGAGTTCTATCTGAACCTAGGGGATGATGCAGACCCTGTTACTCATGAACATGCTGACGTCAATGGTG
GGGTCCACGACTGGGAAGATGATGGATTGGATGCACACTCTAATAGTGATGGTGGAGATGGTGGAGATGGTGAAGATGGAGAAGAAGAGATCAATGAAGTGGGTGACATG
CAACAAGTGAGAATGAATGCTCCCACTACTGAAGTTCCACCACCTCAAGAACCACGGAACAATCCTCCACTTTTGACTGAAGCACCCCATGTGCCGGTTGATAGGTATGA
GTTCGAGGTTGATGATGGATACAAGGGTGGATGTGTCAATATTCACACAAAAACGTGTACTTGTCGTGAATTTGATTACTACGAGCTCCCATGTTCGCATGCGATCGCAG
CATGCATCTACCGAAACATAGACCCCTTTCCCCTTTGCTCTGAAGTCTATCACATGGAATCTGTGTTGATGGCTTACGCAAAACTCATATATCCTCTTGGGCATGATTCT
TAG
Protein sequenceShow/hide protein sequence
MPHVWVCFGGLWNEIGKEYEGGVLRGFDVDTNITYDQFLGHVYEISEINSDEFYLNLGDDADPVTHEHADVNGGVHDWEDDGLDAHSNSDGGDGGDGEDGEEEINEVGDM
QQVRMNAPTTEVPPPQEPRNNPPLLTEAPHVPVDRYEFEVDDGYKGGCVNIHTKTCTCREFDYYELPCSHAIAACIYRNIDPFPLCSEVYHMESVLMAYAKLIYPLGHDS