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Spg029945 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029945
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionBEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome locationscaffold6:8745015..8749708
RNA-Seq ExpressionSpg029945
SyntenySpg029945
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015189.1 hypothetical protein SDJN02_22822 [Cucurbita argyrosperma subsp. argyrosperma]3.8e-5683.69Show/hide
Query:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR
        MEQ  +D S+SIE   QIP  SPNS IPE PTCSV+EDCT+ + SLS TEIFKAI+VVEKDSLAIAESFTSLFASLRS LSEVTSNSIDHMHCF+DAAGR
Subjt:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQLYPFYF
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA QLYPFYF
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQLYPFYF

XP_022136587.1 uncharacterized protein LOC111008257 isoform X1 [Momordica charantia]1.9e-5585.61Show/hide
Query:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR
        M+Q RADFST I  +SQIPG SPNST+ E+PTCSV+ED TKS+P L QTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSE + NSIDHMHCFSDAAG 
Subjt:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQLYPF
        LQESVLDAATKGNRYINSSLRLNQEMKGIDNLA QLYPF
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQLYPF

XP_022136588.1 uncharacterized protein LOC111008257 isoform X2 [Momordica charantia]4.0e-5385.29Show/hide
Query:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR
        M+Q RADFST I  +SQIPG SPNST+ E+PTCSV+ED TKS+P L QTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSE + NSIDHMHCFSDAAG 
Subjt:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL
        LQESVLDAATKGNRYINSSLRLNQEMKGIDNLA QL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL

XP_022984532.1 uncharacterized protein LOC111482798 [Cucurbita maxima]2.0e-5283.09Show/hide
Query:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR
        MEQ  +D S+SIE  SQIP  SPNS IPE PTCSV+EDCT+ + SLS TEIFKAI+VVEK+SLAIAESFTSLFASLRS LSEVTSNSIDHMHCF+DAAGR
Subjt:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA QL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL

XP_023553161.1 uncharacterized protein LOC111810650 [Cucurbita pepo subsp. pepo]8.8e-5383.82Show/hide
Query:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR
        MEQ  +D STSIE   QIP  SPNS IPE PTCSV+EDCT+ + SLS TEIFKAI+VVEKDSLAIAESFTSLFASLRS LSEVTSNSIDHMHCF+DAAGR
Subjt:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA QL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL

TrEMBL top hitse value%identityAlignment
A0A0A0KWT2 Uncharacterized protein6.4e-4983.21Show/hide
Query:  MEQPRADFS-TSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAG
        MEQ  AD S TSIETE QIP  SPNST     T SVIEDCTK+Q SLSQ +I KAIEVVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCF+DAAG
Subjt:  MEQPRADFS-TSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL
        RLQESVLDAATKGNRYINSSLRLNQEMKG+DNLA QL
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL

A0A6J1C5W4 uncharacterized protein LOC111008257 isoform X19.2e-5685.61Show/hide
Query:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR
        M+Q RADFST I  +SQIPG SPNST+ E+PTCSV+ED TKS+P L QTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSE + NSIDHMHCFSDAAG 
Subjt:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQLYPF
        LQESVLDAATKGNRYINSSLRLNQEMKGIDNLA QLYPF
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQLYPF

A0A6J1C7Z8 uncharacterized protein LOC111008257 isoform X21.9e-5385.29Show/hide
Query:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR
        M+Q RADFST I  +SQIPG SPNST+ E+PTCSV+ED TKS+P L QTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSE + NSIDHMHCFSDAAG 
Subjt:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL
        LQESVLDAATKGNRYINSSLRLNQEMKGIDNLA QL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL

A0A6J1EUG1 uncharacterized protein LOC1114376689.5e-5383.09Show/hide
Query:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR
        MEQ  +D S+SIE   QIP  SPNS IPE PTCSV+EDCT+ + SLS TEIFKAI+VVEKDSLAIAESFTSLFASLRS LSEVTSNSIDHMHCF+DAAGR
Subjt:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA QL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL

A0A6J1J2E9 uncharacterized protein LOC1114827989.5e-5383.09Show/hide
Query:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR
        MEQ  +D S+SIE  SQIP  SPNS IPE PTCSV+EDCT+ + SLS TEIFKAI+VVEK+SLAIAESFTSLFASLRS LSEVTSNSIDHMHCF+DAAGR
Subjt:  MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA QL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)8.3e-2571.08Show/hide
Query:  KSQP-SLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGRLQESVLDAATKGNRYINSSLRL
        +S+P SL+Q EI K +  VEKDS AIAESF+SLF SLRS LSE T +S+DHM CF +AAGRLQE+ LDAATKGNRYINS LRL
Subjt:  KSQP-SLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGRLQESVLDAATKGNRYINSSLRL

AT4G23330.2 unknown protein1.0e-3069.07Show/hide
Query:  KSQP-SLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL
        +S+P SL+Q EI K +  VEKDS AIAESF+SLF SLRS LSE T +S+DHM CF +AAGRLQE+ LDAATKGNRYINS LRLN+E+KG++NLA +L
Subjt:  KSQP-SLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAVQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAACCTCGGGCAGATTTTTCGACGAGCATAGAAACTGAAAGTCAGATTCCGGGCATATCCCCTAATTCGACCATTCCCGAGTTGCCCACTTGTTCTGTCATTGA
AGATTGCACCAAATCCCAACCTTCGTTGAGCCAGACCGAGATTTTCAAAGCCATTGAAGTCGTCGAAAAGGATTCTCTCGCCATAGCTGAGAGCTTCACCTCTCTCTTTG
CTTCCCTCCGTTCGGCTCTCTCCGAGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAGCGATGCTGCAGGCCGCCTTCAAGAATCTGTGCTTGATGCGGCTACA
AAGGGTAACCGATACATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATTGACAATCTAGCTGTTCAGCTGTATCCTTTCTACTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCAACCTCGGGCAGATTTTTCGACGAGCATAGAAACTGAAAGTCAGATTCCGGGCATATCCCCTAATTCGACCATTCCCGAGTTGCCCACTTGTTCTGTCATTGA
AGATTGCACCAAATCCCAACCTTCGTTGAGCCAGACCGAGATTTTCAAAGCCATTGAAGTCGTCGAAAAGGATTCTCTCGCCATAGCTGAGAGCTTCACCTCTCTCTTTG
CTTCCCTCCGTTCGGCTCTCTCCGAGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAGCGATGCTGCAGGCCGCCTTCAAGAATCTGTGCTTGATGCGGCTACA
AAGGGTAACCGATACATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATTGACAATCTAGCTGTTCAGCTGTATCCTTTCTACTTCTAG
Protein sequenceShow/hide protein sequence
MEQPRADFSTSIETESQIPGISPNSTIPELPTCSVIEDCTKSQPSLSQTEIFKAIEVVEKDSLAIAESFTSLFASLRSALSEVTSNSIDHMHCFSDAAGRLQESVLDAAT
KGNRYINSSLRLNQEMKGIDNLAVQLYPFYF