; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg029946 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029946
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTetratricopeptide-like helical
Genome locationscaffold6:11026684..11026929
RNA-Seq ExpressionSpg029946
SyntenySpg029946
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]2.2e-1167.65Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG
        MSVSLEALAMAGIDSNEW MDAQEW  N    + VPPHLLADE++DED    E +TST SNY   V G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]5.0e-1673.53Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG
        MSVSLEALAMAGI SNEWAMDA+EW  N  +ENDVPPHLLADED+D+D     N+TST SNY+ PVAG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]5.0e-1673.53Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG
        MSVSLEALAMAGI SNEWAMDA+EW  N  +ENDVPPHLLADED+D+D     N+TST SNY+ PVAG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]2.2e-1167.65Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG
        MSVSLEALAMAGIDSNEW MDAQEW  N    + VPPHLLADE++DED    E +TST SNY   V G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.6e-1181.63Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDE
        MSVSLEALAMAGIDSNEWAMDA+EW  N  ME D+PPHLLADED++EDE
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDE

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein6.3e-0970.91Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNV-AMEND--VPPHLLADEDEDEDEEEE
        M VSLEALAMAGIDSNEWAMDA+EW +N   MEND  +PPHLLADEDE+    +E
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNV-AMEND--VPPHLLADEDEDEDEEEE

A0A0A0KWE7 Uncharacterized protein1.6e-1269.12Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG
        MSVSLEALAMAGIDSNEWAMDA+EW  N    + VPPHLLADE++DED +E    TST SNY  PV G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG

A0A5A7TS68 Tetratricopeptide-like helical1.0e-1167.65Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG
        MSVSLEALAMAGIDSNEW MDAQEW  N    + VPPHLLADE++DED    E +TST SNY   V G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG

A0A5D3CZU0 Tetratricopeptide-like helical1.0e-1167.65Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG
        MSVSLEALAMAGIDSNEW MDAQEW  N    + VPPHLLADE++DED    E +TST SNY   V G
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAG

A0A6J1FX98 uncharacterized protein LOC1114478808.0e-1281.63Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDE
        MSVSLEALAMAGIDSNEWAMDA+EW  N  ME D+PPHLLADED++EDE
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein3.2e-0547.92Show/hide
Query:  LEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEE
        +EALAMAG+D  EW +  +EW      E+ VP HLLAD+ ++E++EE+
Subjt:  LEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTAGAAGCTCTGGCGATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTCAAGAATGGGGAAGCAATGTTGCAATGGAGAATGACGTTCCACC
GCATTTATTAGCCGATGAAGATGAAGACGAAGACGAAGAAGAAGAAGAAAATATAACAAGTACAGCCAGTAACTATACGATTCCGGTCGCTGGAAAGATGACGGTGGTGA
TGGTGTGTACTGCTTTCCGGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTAGAAGCTCTGGCGATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTCAAGAATGGGGAAGCAATGTTGCAATGGAGAATGACGTTCCACC
GCATTTATTAGCCGATGAAGATGAAGACGAAGACGAAGAAGAAGAAGAAAATATAACAAGTACAGCCAGTAACTATACGATTCCGGTCGCTGGAAAGATGACGGTGGTGA
TGGTGTGTACTGCTTTCCGGCGATGA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAGKMTVVMVCTAFRR