CuGenDBv2

Gene ID	Spg029953
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase III subunit RPC5
Genome location	scaffold6:9863528..9871275
RNA-Seq Expression	Spg029953
Synteny	Spg029953
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR006886 - DNA-directed RNA polymerase III subunit Rpc5

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008453719.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo]

5.8e-144

77.13

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        EE+TMVDDDPMEED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIESNNYD+KADD+ QMKKQTLTS
Subjt:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNN+RAD DVKSEE  D NSA ASRKQ                            
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA

Query:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                   KKQ GPSTELKT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFSMSP
Subjt:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

XP_008453720.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucumis melo]

5.8e-144

77.13

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        EE+TMVDDDPMEED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIESNNYD+KADD+ QMKKQTLTS
Subjt:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNN+RAD DVKSEE  D NSA ASRKQ                            
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA

Query:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                   KKQ GPSTELKT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFSMSP
Subjt:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

XP_022136590.1 DNA-directed RNA polymerase III subunit RPC5 [Momordica charantia]

1.5e-144

79.73

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKP
        MDLDDLDEPSQVPSRTSRFAPK SK KPKPKS+VVPKPEPQQPPTKPEP+PP SK  PEL EPDA  GEKKEE EEVEVKPKVE SLPNGV KMDVETK 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKP

Query:  EAEEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTL
        EAEEETMV DDPMEED SEDMVVREIDVLFTPSADINSKLYVLQYPLRP WRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYD+KA+ SLQMKKQTL
Subjt:  EAEEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSY
        TSSWQPPLATTYAVGLL GN+LHLNPIHAVVQLRPS EHLNSGGPKRKN VR DPDVK EE  D NSA ASRKQ                          
Subjt:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSY

Query:  LADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                     KKQ G STELKTGD+ECWIPLKYYGLESDLSTRYQRSMVA+K SPIQFSMSP
Subjt:  LADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

XP_038876785.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida]

8.7e-148

79.61

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLDDLDE SQV SRTSRFAPKASK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDARIGEKKEE EEVE+KPKVEPSLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        EEETMVDDDPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRPRWRPYEFEGRC+EVRVKPSSGEVEVDLNVDIESNNYD+KAD SLQMKKQTLTS
Subjt:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKN+VRADPDVKSEE  D NSA ASRKQ                            
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA

Query:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                   KKQ GPSTELKTGDEECWIPLKYYG ESDLSTR+ RSMVA+  +P+QFSMSP
Subjt:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

XP_038876786.1 DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Benincasa hispida]

8.7e-148

79.61

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLDDLDE SQV SRTSRFAPKASK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDARIGEKKEE EEVE+KPKVEPSLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        EEETMVDDDPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRPRWRPYEFEGRC+EVRVKPSSGEVEVDLNVDIESNNYD+KAD SLQMKKQTLTS
Subjt:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKN+VRADPDVKSEE  D NSA ASRKQ                            
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA

Query:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                   KKQ GPSTELKTGDEECWIPLKYYG ESDLSTR+ RSMVA+  +P+QFSMSP
Subjt:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUN5 Uncharacterized protein

5.0e-141

76.03

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQP TK EPQPP+SKPE+ EPDAR+ EKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        EE+ MVDDDP+EED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVEVDLNVDIESNNYDNKAD + QMKKQTLTS
Subjt:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNNVRAD DVKSEE  D NSA ASRKQ                            
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA

Query:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                   KKQ GPSTE+KT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFSMSP
Subjt:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

A0A1S3BWX9 DNA-directed RNA polymerase III subunit RPC5 isoform X2

2.8e-144

77.13

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        EE+TMVDDDPMEED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIESNNYD+KADD+ QMKKQTLTS
Subjt:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNN+RAD DVKSEE  D NSA ASRKQ                            
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA

Query:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                   KKQ GPSTELKT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFSMSP
Subjt:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

A0A1S3BX09 DNA-directed RNA polymerase III subunit RPC5 isoform X1

2.8e-144

77.13

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        EE+TMVDDDPMEED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIESNNYD+KADD+ QMKKQTLTS
Subjt:  EEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNN+RAD DVKSEE  D NSA ASRKQ                            
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA

Query:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                   KKQ GPSTELKT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFSMSP
Subjt:  DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

A0A6J1C4C6 DNA-directed RNA polymerase III subunit RPC5

7.4e-145

79.73

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKP
        MDLDDLDEPSQVPSRTSRFAPK SK KPKPKS+VVPKPEPQQPPTKPEP+PP SK  PEL EPDA  GEKKEE EEVEVKPKVE SLPNGV KMDVETK 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKP

Query:  EAEEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTL
        EAEEETMV DDPMEED SEDMVVREIDVLFTPSADINSKLYVLQYPLRP WRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYD+KA+ SLQMKKQTL
Subjt:  EAEEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSY
        TSSWQPPLATTYAVGLL GN+LHLNPIHAVVQLRPS EHLNSGGPKRKN VR DPDVK EE  D NSA ASRKQ                          
Subjt:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSY

Query:  LADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                     KKQ G STELKTGD+ECWIPLKYYGLESDLSTRYQRSMVA+K SPIQFSMSP
Subjt:  LADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

A0A6J1EMD6 DNA-directed RNA polymerase III subunit RPC5 isoform X1

3.2e-140

76.92

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLDDLDEPSQVPSRTSRFAPK SK KPKPKS+VVPKPEPQQPPTK EP+ PVSKPE+AEPDA IGEKKEE EEVEVKPKVE SLPNGV KMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EEETMV-DDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLT
        EEETMV DDDPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRPRWRPYEFEGRC+EVRVKP++GEVEVDLNVDIESNNYD+KAD +LQMKKQTL 
Subjt:  EEETMV-DDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLT

Query:  SSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYL
        SSWQPP+AT+YAVGLL G++LHLNP+H VVQLRPSFEHLNSGGPKRK NVRADP+VKSEE TD NSA  SRKQ                           
Subjt:  SSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYL

Query:  ADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP
                    KKQ GPSTE KTGDEE WIPLKYYGLESDLSTR+ RSMVA+K SP+QFSMSP
Subjt:  ADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSP

SwissProt top hits

e value

%identity

Alignment

O74883 DNA-directed RNA polymerase III subunit rpc5

1.8e-10

34.39

Show/hide

Query:  TKPEAEEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPY-EFEGRCE-EVRVKPSSGEVEVDLNVDIESNNYDNKA----DD
        ++ +A EE  + +D  EE   +D VVR   V F+P   + + L + Q+PLRP+ R Y +  G    +VRVKP +G +EVD+ +       ++KA    + 
Subjt:  TKPEAEEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPY-EFEGRCE-EVRVKPSSGEVEVDLNVDIESNNYDNKA----DD

Query:  SLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRK
           ++ QTL+   Q P  T   VGL+   Q H+ P+  + QLRPS +H+N    K K
Subjt:  SLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRK

Q9CZT4 DNA-directed RNA polymerase III subunit RPC5

2.9e-13

25.1

Show/hide

Query:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DNKADDSLQMKKQTL
        +D V++EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +D  + NY                  +     S  M KQT 
Subjt:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DNKADDSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEKL----RKQGQEKATQRLPNA
         SS        YA  L    +LHL P+H ++QLRPSF +L+          +AD   +  E  + +  +S+ + +E+++++     +   E+A QR    
Subjt:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEKL----RKQGQEKATQRLPNA

Query:  TSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQ
               R +   +++KK            EE W+ L YYG+    S   ++ ++ +  S ++
Subjt:  TSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQ

Q9NVU0 DNA-directed RNA polymerase III subunit RPC5

3.8e-13

25.48

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Query:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DNKADDSLQMKKQTL
        +D VV+EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +D  + NY                  +     S  M KQT 
Subjt:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DNKADDSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEKL----RKQGQEKATQRLPNA
         SS      + YA  L    +LHL P+H ++QLRPSF +L+          +AD   +  E  + +  +S+ + +++++++     +   E+A QR    
Subjt:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEKL----RKQGQEKATQRLPNA

Query:  TSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQ
               R +   +++KK            EE W+ L YYGL    S   ++ ++    S ++
Subjt:  TSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G49530.1 SIN-like family protein

1.1e-55

39.11

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Query:  MDLDDLDEPSQVPSRTSRFAP-KASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPE
        MD DD D+P +V ++T RFAP +A K KPKPK        P+    KP   PP S+ E       + + + + +   V  KVE  + NG  KM++++K +
Subjt:  MDLDDLDEPSQVPSRTSRFAP-KASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPE

Query:  AEEETM------------VDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKA
         E E M            + ++  EE+  +D+VVREIDV F PS D N++LYVLQYPLRP WRPYE + RCEEVRV PS+ +VE+DL++D+ S NYD  +
Subjt:  AEEETM------------VDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKA

Query:  DDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEKLRKQGQEKA
        +  L M KQTL ++W+ P    YAVG+L+G++LHLNP+HAV QLRPS + L+S           D   K EE T+ S   S+KQ          +G ++A
Subjt:  DDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEKLRKQGQEKA

Query:  TQRLPNATSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSPCLRIHD
                                     ST+ K  +EE W+ LKY+GL+S+  +RY   M+A   S I F+MSP   I++
Subjt:  TQRLPNATSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSPCLRIHD

Sequences

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CDS sequence

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ATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTCGCTCCCAAGGCCTCTAAATTGAAGCCGAAACCGAAATCGGATGTAGTT
CCGAAACCGGAGCCCCAACAGCCGCCAACGAAGCCGGAACCTCAACCTCCCGTTTCGAAGCCGGAACTTGCAGAGCCGGATGCTCGAATTGGGGAGAAGAAGGAA
GAAGCTGAAGAAGTTGAAGTGAAGCCTAAAGTTGAACCCTCGCTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGCCAGAGGCTGAAGAAGAGACAATG
GTGGATGATGATCCAATGGAAGAGGATACTTCTGAAGATATGGTGGTTCGTGAAATCGACGTTCTGTTTACTCCTTCAGCTGATATCAATTCGAAATTATACGTA
TTGCAATATCCTCTGAGACCACGCTGGAGGCCCTACGAATTTGAGGGGCGATGTGAAGAGGTGAGAGTTAAACCTAGCAGTGGAGAAGTTGAAGTCGATCTGAAT
GTTGATATTGAATCCAATAACTATGACAATAAGGCTGATGACAGTTTGCAAATGAAGAAGCAGACTTTGACATCTTCATGGCAACCACCTCTAGCAACTACCTAT
GCTGTTGGGCTGCTTACGGGTAATCAGCTACACCTGAATCCCATACATGCAGTCGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGG
AAAAACAATGTTAGAGCTGATCCAGATGTTAAGTCAGAAGAGCCTACAGATAACTCTGCAACTGCATCAAGGAAGCAGGGCGACGAAAACCTAGAGAAATTGAGG
AAACAGGGTCAGGAGAAGGCAACACAGAGGCTGCCTAATGCAACCTCTTATCTGGCAGACGATAGAGACGAGGGAATAAGATACATTAAGAAGAAGCAACCAGGA
CCTTCAACGGAACTTAAAACTGGAGATGAAGAGTGCTGGATTCCACTTAAGTACTATGGCCTAGAGAGTGATCTATCAACCAGATATCAGCGAAGCATGGTGGCA
AAGAAAATTTCCCCTATACAATTTTCAATGAGCCCATGCCTGAGAATACATGATGCCTGGGAATACTATGCCTGGGAATAA

mRNA sequence

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Protein sequence

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MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETM
VDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTSSWQPPLATTY
AVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLADDRDEGIRYIKKKQPG
PSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSPCLRIHDAWEYYAWE

Spg029953 (gene) of Sponge gourd (cylindrica) v1 genome