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Spg029970 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg029970
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold6:10175675..10176676
RNA-Seq ExpressionSpg029970
SyntenySpg029970
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.4e-0437.97Show/hide
Query:  DEKQSGGIGWIISRNDGSLVVAGHRCIKRPWSISWLEALVATEGLKLMSDQS--PGVRVELDCLQVVKLLNDKEEDVTE
        D    GGIGWII   DG +V+AG+R ++   ++  LEA    EGL+ +++      + +E D  +V  LLN K ED+T+
Subjt:  DEKQSGGIGWIISRNDGSLVVAGHRCIKRPWSISWLEALVATEGLKLMSDQS--PGVRVELDCLQVVKLLNDKEEDVTE
TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224031.6e-0437.97Show/hide
Query:  DEKQSGGIGWIISRNDGSLVVAGHRCIKRPWSISWLEALVATEGLKLMSDQS--PGVRVELDCLQVVKLLNDKEEDVTE
        D    GGIGWII   DG +V+AG+R ++   ++  LEA    EGL+ +++      + +E D  +V  LLN K ED+T+
Subjt:  DEKQSGGIGWIISRNDGSLVVAGHRCIKRPWSISWLEALVATEGLKLMSDQS--PGVRVELDCLQVVKLLNDKEEDVTE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTGCGTGTGCACGCGAGTGATGCAGTTCAATTTTGCATTCGGGATAATAACCAAGACGAGAAACAGAGTGGTGGGATTGGCTGGATTATAAGTCGGAACGATGG
GTCTTTGGTGGTAGCAGGGCATAGATGCATCAAAAGACCGTGGAGTATAAGTTGGCTTGAAGCTTTAGTAGCAACAGAGGGGTTGAAATTGATGTCAGATCAATCTCCAG
GTGTTCGTGTAGAGCTTGATTGCCTTCAGGTGGTTAAGCTTCTCAATGATAAGGAGGAAGATGTTACTGAGTTGTGGAATTTCATCTTGGAAGCGAAAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTGCGTGTGCACGCGAGTGATGCAGTTCAATTTTGCATTCGGGATAATAACCAAGACGAGAAACAGAGTGGTGGGATTGGCTGGATTATAAGTCGGAACGATGG
GTCTTTGGTGGTAGCAGGGCATAGATGCATCAAAAGACCGTGGAGTATAAGTTGGCTTGAAGCTTTAGTAGCAACAGAGGGGTTGAAATTGATGTCAGATCAATCTCCAG
GTGTTCGTGTAGAGCTTGATTGCCTTCAGGTGGTTAAGCTTCTCAATGATAAGGAGGAAGATGTTACTGAGTTGTGGAATTTCATCTTGGAAGCGAAAGCCTAG
Protein sequenceShow/hide protein sequence
MGVRVHASDAVQFCIRDNNQDEKQSGGIGWIISRNDGSLVVAGHRCIKRPWSISWLEALVATEGLKLMSDQSPGVRVELDCLQVVKLLNDKEEDVTELWNFILEAKA