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Spg030009 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030009
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:7990322..7990925
RNA-Seq ExpressionSpg030009
SyntenySpg030009
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-1332.24Show/hide
Query:  MNLAQRESYSSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESD
        ++L +R   ++  + +P   N WKLN +A+W A +N   +GWILRD  G +I+A C+ I  +  I  LE   I EG+ A ++    R      P+ +ESD
Subjt:  MNLAQRESYSSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESD

Query:  SATVIKVLNREVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA
        S   I +L+R+ +DQ+E+    + I+ ++    + S     R  N  A  LA
Subjt:  SATVIKVLNREVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.5e-1138.53Show/hide
Query:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN
        ++  R +P   N WKLN DA+W A +N D +GWILRD  G +I+ GC+ I  +  I  LE   I EG+ A ++    R      P+ +ESDS   I +L+
Subjt:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN

Query:  REVEDQSEL
        R V+ + +L
Subjt:  REVEDQSEL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.5e-1138.53Show/hide
Query:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN
        ++  R +P   N WKLN DA+W A +N D +GWILRD  G +I+ GC+ I  +  I  LE   I EG+ A ++    R      P+ +ESDS   I +L+
Subjt:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN

Query:  REVEDQSEL
        R V+ + +L
Subjt:  REVEDQSEL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.1e-1133.09Show/hide
Query:  PLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLNREVEDQS
        P   ++W LNADASW   ++   +GWI+R  +G ++ AG + +     +K+LEA  I+EG+        +R      PL +E+DSA V  +LNR+ ED +
Subjt:  PLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLNREVEDQS

Query:  ELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA
        +     + I  L     + +F+K  R  N  A +LA
Subjt:  ELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-1433.77Show/hide
Query:  MNLAQRESYSSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFK--PPLVVE
        ++L +R   ++  R +P   N WKLN DA+W A +N   +GWILRD  G +I+A C+ I  +  I  LE   I EG+ A ++    R I  +   P+ +E
Subjt:  MNLAQRESYSSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFK--PPLVVE

Query:  SDSATVIKVLNREVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA
        SDS   I +L+R+ +DQ+E+    + I+ ++    + S     R  N  A +LA
Subjt:  SDSATVIKVLNREVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.8e-1432.24Show/hide
Query:  MNLAQRESYSSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESD
        ++L +R   ++  + +P   N WKLN +A+W A +N   +GWILRD  G +I+A C+ I  +  I  LE   I EG+ A ++    R      P+ +ESD
Subjt:  MNLAQRESYSSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESD

Query:  SATVIKVLNREVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA
        S   I +L+R+ +DQ+E+    + I+ ++    + S     R  N  A  LA
Subjt:  SATVIKVLNREVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.2e-1138.53Show/hide
Query:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN
        ++  R +P   N WKLN DA+W A +N D +GWILRD  G +I+ GC+ I  +  I  LE   I EG+ A ++    R      P+ +ESDS   I +L+
Subjt:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN

Query:  REVEDQSEL
        R V+ + +L
Subjt:  REVEDQSEL

A0A6J1DNV9 uncharacterized protein LOC1110224035.4e-1233.09Show/hide
Query:  PLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLNREVEDQS
        P   ++W LNADASW   ++   +GWI+R  +G ++ AG + +     +K+LEA  I+EG+        +R      PL +E+DSA V  +LNR+ ED +
Subjt:  PLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLNREVEDQS

Query:  ELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA
        +     + I  L     + +F+K  R  N  A +LA
Subjt:  ELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.2e-1138.53Show/hide
Query:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN
        ++  R +P   N WKLN DA+W A +N D +GWILRD  G +I+ GC+ I  +  I  LE   I EG+ A ++    R      P+ +ESDS   I +L+
Subjt:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN

Query:  REVEDQSEL
        R V+ + +L
Subjt:  REVEDQSEL

A0A6J1DSV1 uncharacterized protein LOC1110236085.2e-1533.77Show/hide
Query:  MNLAQRESYSSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFK--PPLVVE
        ++L +R   ++  R +P   N WKLN DA+W A +N   +GWILRD  G +I+A C+ I  +  I  LE   I EG+ A ++    R I  +   P+ +E
Subjt:  MNLAQRESYSSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFK--PPLVVE

Query:  SDSATVIKVLNREVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA
        SDS   I +L+R+ +DQ+E+    + I+ ++    + S     R  N  A +LA
Subjt:  SDSATVIKVLNREVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein4.1e-0422.56Show/hide
Query:  KLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLNREVEDQSELALFTK
        K N DAS      +  +GW++R+S G+++E G  +   + T +  E   +I  I+A       +       ++ E D++ V +++N +  D   L  +  
Subjt:  KLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLNREVEDQSELALFTK

Query:  TIFGLVSFANVASFSKCKRAENSEAQNLAHELV
        TI   +       F    R +N  A  L  + +
Subjt:  TIFGLVSFANVASFSKCKRAENSEAQNLAHELV

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)7.0e-0429.03Show/hide
Query:  PLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIE
        P  +   K N D+ +    +  S  WI+RDSNG +I +GC ++ Q ++    EA   +  ++
Subjt:  PLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIE

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.8e-0725.17Show/hide
Query:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN
        S + +  P  ++  K N DAS   ++ +  +GWILR+S G++IE G  +   + T +  E   +I  I+A       +       ++ E D+ T+ +++N
Subjt:  SSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLN

Query:  REVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLAHELV
         +      L  F  TI   +       FS   R +N  A  LA + +
Subjt:  REVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLAHELV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTTGCCCAGAGGGAGAGCTACTCGAGTCACGAGAGATTGAGACCTCTGGAGCAAAATGTCTGGAAACTCAATGCCGATGCATCCTGGTGTGCGAAATCGAACAT
TGACAGTGTGGGGTGGATCCTCCGTGACTCTAATGGATCTCTTATCGAAGCGGGGTGCAAAAGAATTAACCAAAAATGGACAATCAAAATCCTTGAGGCAAAAGTCATCA
TAGAAGGAATTGAAGCTTACCTGAAGAATTCAGAGGTCAGGGAGATATGCTTCAAGCCCCCACTGGTGGTTGAATCAGACTCAGCTACGGTGATTAAGGTGCTCAATAGA
GAGGTGGAAGATCAATCGGAATTGGCCCTGTTCACAAAGACCATTTTCGGTCTTGTCTCCTTTGCAAATGTCGCTAGCTTCTCAAAATGTAAAAGAGCCGAAAATTCTGA
GGCTCAAAATCTTGCTCATGAGTTAGTTGGACTCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCTTGCCCAGAGGGAGAGCTACTCGAGTCACGAGAGATTGAGACCTCTGGAGCAAAATGTCTGGAAACTCAATGCCGATGCATCCTGGTGTGCGAAATCGAACAT
TGACAGTGTGGGGTGGATCCTCCGTGACTCTAATGGATCTCTTATCGAAGCGGGGTGCAAAAGAATTAACCAAAAATGGACAATCAAAATCCTTGAGGCAAAAGTCATCA
TAGAAGGAATTGAAGCTTACCTGAAGAATTCAGAGGTCAGGGAGATATGCTTCAAGCCCCCACTGGTGGTTGAATCAGACTCAGCTACGGTGATTAAGGTGCTCAATAGA
GAGGTGGAAGATCAATCGGAATTGGCCCTGTTCACAAAGACCATTTTCGGTCTTGTCTCCTTTGCAAATGTCGCTAGCTTCTCAAAATGTAAAAGAGCCGAAAATTCTGA
GGCTCAAAATCTTGCTCATGAGTTAGTTGGACTCACTTAA
Protein sequenceShow/hide protein sequence
MNLAQRESYSSHERLRPLEQNVWKLNADASWCAKSNIDSVGWILRDSNGSLIEAGCKRINQKWTIKILEAKVIIEGIEAYLKNSEVREICFKPPLVVESDSATVIKVLNR
EVEDQSELALFTKTIFGLVSFANVASFSKCKRAENSEAQNLAHELVGLT