; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030012 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030012
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold6:7669733..7677708
RNA-Seq ExpressionSpg030012
SyntenySpg030012
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4369030.1 hypothetical protein F8388_013359 [Cannabis sativa]5.2e-1033.82Show/hide
Query:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ
        TD ++    KG G+ AV+ + +G +V A   F    LSV+ AE  A+  G++L  R  IT+A V S+S + IK +N +    ++    V+ I+++   FQ
Subjt:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ

Query:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP
         L F   +R CNR A+ LAK +   + S +W   +P
Subjt:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP

KAF4379869.1 hypothetical protein G4B88_012792, partial [Cannabis sativa]1.4e-1033.09Show/hide
Query:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ
        TD ++    +G G+ AV+ + +G +V A   F    LS++ AE  A+  G++L  R  IT+A V S+S + IK +N +    ++  H V+ I+++   FQ
Subjt:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ

Query:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP
         L F   +R CNR A+ LAK +   + S +W   +P
Subjt:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP

KAF4392199.1 hypothetical protein F8388_012655 [Cannabis sativa]1.4e-1033.09Show/hide
Query:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ
        TD ++    +G G+ AV+ + +G +V A   F    LS++ AE  A+  G++L  R  IT+A V S+S + IK +N +    ++  H V+ I+++   FQ
Subjt:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ

Query:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP
         L F   +R CNR A+ LAK +   + S +W   +P
Subjt:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP

XP_015381856.1 uncharacterized protein LOC107175052 [Citrus sinensis]8.8e-1032.87Show/hide
Query:  VSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMG
        + +  D A+    + AG+G V+ N +G I+AA    E  S +V  AE KA++ GL++    E T   V  +S   I++IN ++  ++E+   +  I    
Subjt:  VSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMG

Query:  TSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVPQQI
         SFQ     HVSR CN  A  LAK AL   +S +W+   P ++
Subjt:  TSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVPQQI

XP_024046567.1 uncharacterized protein LOC112100924 [Citrus clementina]1.0e-1029.53Show/hide
Query:  VSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMG
        V +  D A++   K AG+G V+ N+RG ++AA         ++  AE  AI  G+ + + + ++   + ++  N   + N ++  M+E++  +  I    
Subjt:  VSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMG

Query:  TSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVPQQITSMSGS
          FQ +SF HV R+CN  A  LAK AL    S++W  N P  +  M+ S
Subjt:  TSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVPQQITSMSGS

TrEMBL top hitse value%identityAlignment
A0A7J6GCK1 Uncharacterized protein (Fragment)6.6e-1133.09Show/hide
Query:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ
        TD ++    +G G+ AV+ + +G +V A   F    LS++ AE  A+  G++L  R  IT+A V S+S + IK +N +    ++  H V+ I+++   FQ
Subjt:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ

Query:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP
         L F   +R CNR A+ LAK +   + S +W   +P
Subjt:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP

A0A7J6HCI0 Uncharacterized protein6.6e-1133.09Show/hide
Query:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ
        TD ++    +G G+ AV+ + +G +V A   F    LS++ AE  A+  G++L  R  IT+A V S+S + IK +N +    ++  H V+ I+++   FQ
Subjt:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ

Query:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP
         L F   +R CNR A+ LAK +   + S +W   +P
Subjt:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP

A0A7J6HML3 Uncharacterized protein5.6e-1030.25Show/hide
Query:  KKVETNQSQVGEGASLVEQAAMVSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKM
        +K   N +     A +  Q     + TD ++    +G G+ AV+ + +G +V A   F    LSV+ AE  A+  G++L  R  IT+A V S+S + IK 
Subjt:  KKVETNQSQVGEGASLVEQAAMVSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKM

Query:  INGEIPIMSEVYHWVRQIRVMGTSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP
        +N +    ++    V+ I+++   FQ L F   +R CNR A+ LAK +   + S +W   +P
Subjt:  INGEIPIMSEVYHWVRQIRVMGTSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP

A0A7J6I5R5 Uncharacterized protein2.5e-1033.82Show/hide
Query:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ
        TD ++    KG G+ AV+ + +G +V A   F    LSV+ AE  A+  G++L  R  IT+A V S+S + IK +N +    ++    V+ I+++   FQ
Subjt:  TDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIRVMGTSFQ

Query:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP
         L F   +R CNR A+ LAK +   + S +W   +P
Subjt:  ELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP

A0A803QSC8 Uncharacterized protein5.6e-1030.25Show/hide
Query:  KKVETNQSQVGEGASLVEQAAMVSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKM
        +K   N +     A +  Q     + TD ++    +G G+ AV+ + +G +V A   F    LSV+ AE  A+  G++L  R  IT+A V S+S + IK 
Subjt:  KKVETNQSQVGEGASLVEQAAMVSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKM

Query:  INGEIPIMSEVYHWVRQIRVMGTSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP
        +N +    ++    V+ I+++   FQ L F   +R CNR A+ LAK +   + S +W   +P
Subjt:  INGEIPIMSEVYHWVRQIRVMGTSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G46460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.7e-0431.03Show/hide
Query:  EVYHWVRQIRVMGTSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVPQQITS
        ++++W+R ++     FQE  FT ++R+ N+ AD+LAK  L       +   +P  I+S
Subjt:  EVYHWVRQIRVMGTSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVPQQITS

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0532.31Show/hide
Query:  VSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSV---MAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIR
        V++FTD A +   K  G G V+  N   + A    ++ A+ +V   + AE  A+   L+  Q + IT  ++ S+S   I  I  E P  +E Y  +  I 
Subjt:  VSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSV---MAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEVYHWVRQIR

Query:  VMGTSFQELSFTHVSRECNRQADLLAKHAL
         +   F ++SF+ V R  NR AD LAK +L
Subjt:  VMGTSFQELSFTHVSRECNRQADLLAKHAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGGTGCTCGGGACGTGAAAAGATGCAAAGGAAGGAAAAAGAATCAAAGAGAAAAAAGTCAACATTCGGTCA
ACATTTGACCAGCGTCGAGACGCCATTCCTTGAGTGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTCACAGCGTCGAGACGCTGCGACCTTAGCGTCT
CGACGCTGCGTAATTTCCTTTCCAGAATACGCGTGTTCAGAGGCAGCGTCTCGACGCTACGACGAAAAATCAGTATTTATAGTTCTTTTCGGCTAGGTACAGGGAGTGCA
CAATCAATTGAATCAGCTGCTGCTTTAGCATCTAGACCTCAGGAGGAGACCATTGAACAGAATGTTCTTAACCCTCCTGGTTTTGCCCCTCAAACTCAAGAAAATAAAAA
GTTAGAAGATCTTGTTGGAGCTTTCATTGCAGAGTCTAGTAACAGGACAACCAAATTAGAGGAGGCAGTCTTTGCCATCAACACCACGGTGAATGGCCACGGTGCTGCCA
TCAAGAATATTGAGACTCAGCTGGGACAGTTGGTAAGTGTTGTAAGTACCATGAATAAAGGTAAGGCCCCAGCTGAACAGGAGAAAACTCAGATGGAGTACTGTAAGGCA
ATCACTGTGCATCAGGAGGAAGCTGAAGAGGAGCCTGAGTCTGAGGATTATGAAACGCCCACAGGGGAAGCTGAGGAGGACACATCAGCAGATGAGGCTGAAAAGCCTAA
CCTTGAGCCTCCTATTCCTTCTCCCACACTGATGGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGGTGCTCGGGACGTGAAAAGATGCAAAGGAAGG
AAAAAGAATCAAAGAGAAAAAAGTCAACATTCGGTCAACATTTGACCAGCGTCGAGACGTCATTCCTTGAGTGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAA
AAGGTGGAGACAAATCAATCGCAGGTGGGTGAAGGGGCGTCGCTCGTGGAGCAGGCTGCGATGGTTTCCTTGTTTACAGATGTTGCGATTCGACCATCGTTGAAAGGGGC
AGGTATGGGAGCTGTTGTTCTTAATAATCGTGGGCACATAGTGGCAGCTATGGAATTTTTTGAGGGAGCTTCACTCTCGGTCATGGCAGCAGAGGTTAAGGCAATCGTAG
AGGGTTTGAGGTTGTTACAACGCATGGAAATTACTCATGCTAATGTTCACTCCAATTCATCAAATGCAATAAAGATGATTAATGGAGAAATTCCTATTATGTCCGAGGTT
TATCATTGGGTCCGACAAATACGGGTAATGGGTACATCTTTTCAAGAGTTATCTTTCACTCATGTCTCTAGAGAGTGCAACAGACAGGCTGATCTGCTGGCAAAGCATGC
TCTAGATCACCGAAACTCTATGTTGTGGATAGGAAATGTTCCTCAACAAATTACTTCAATGAGTGGTTCTACTCATTGCACTTGTAATGCTCTTTCTTTTGTGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGGTGCTCGGGACGTGAAAAGATGCAAAGGAAGGAAAAAGAATCAAAGAGAAAAAAGTCAACATTCGGTCA
ACATTTGACCAGCGTCGAGACGCCATTCCTTGAGTGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTCACAGCGTCGAGACGCTGCGACCTTAGCGTCT
CGACGCTGCGTAATTTCCTTTCCAGAATACGCGTGTTCAGAGGCAGCGTCTCGACGCTACGACGAAAAATCAGTATTTATAGTTCTTTTCGGCTAGGTACAGGGAGTGCA
CAATCAATTGAATCAGCTGCTGCTTTAGCATCTAGACCTCAGGAGGAGACCATTGAACAGAATGTTCTTAACCCTCCTGGTTTTGCCCCTCAAACTCAAGAAAATAAAAA
GTTAGAAGATCTTGTTGGAGCTTTCATTGCAGAGTCTAGTAACAGGACAACCAAATTAGAGGAGGCAGTCTTTGCCATCAACACCACGGTGAATGGCCACGGTGCTGCCA
TCAAGAATATTGAGACTCAGCTGGGACAGTTGGTAAGTGTTGTAAGTACCATGAATAAAGGTAAGGCCCCAGCTGAACAGGAGAAAACTCAGATGGAGTACTGTAAGGCA
ATCACTGTGCATCAGGAGGAAGCTGAAGAGGAGCCTGAGTCTGAGGATTATGAAACGCCCACAGGGGAAGCTGAGGAGGACACATCAGCAGATGAGGCTGAAAAGCCTAA
CCTTGAGCCTCCTATTCCTTCTCCCACACTGATGGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGGTGCTCGGGACGTGAAAAGATGCAAAGGAAGG
AAAAAGAATCAAAGAGAAAAAAGTCAACATTCGGTCAACATTTGACCAGCGTCGAGACGTCATTCCTTGAGTGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAA
AAGGTGGAGACAAATCAATCGCAGGTGGGTGAAGGGGCGTCGCTCGTGGAGCAGGCTGCGATGGTTTCCTTGTTTACAGATGTTGCGATTCGACCATCGTTGAAAGGGGC
AGGTATGGGAGCTGTTGTTCTTAATAATCGTGGGCACATAGTGGCAGCTATGGAATTTTTTGAGGGAGCTTCACTCTCGGTCATGGCAGCAGAGGTTAAGGCAATCGTAG
AGGGTTTGAGGTTGTTACAACGCATGGAAATTACTCATGCTAATGTTCACTCCAATTCATCAAATGCAATAAAGATGATTAATGGAGAAATTCCTATTATGTCCGAGGTT
TATCATTGGGTCCGACAAATACGGGTAATGGGTACATCTTTTCAAGAGTTATCTTTCACTCATGTCTCTAGAGAGTGCAACAGACAGGCTGATCTGCTGGCAAAGCATGC
TCTAGATCACCGAAACTCTATGTTGTGGATAGGAAATGTTCCTCAACAAATTACTTCAATGAGTGGTTCTACTCATTGCACTTGTAATGCTCTTTCTTTTGTGACTTAA
Protein sequenceShow/hide protein sequence
MVDWSYSAILELIGCSGREKMQRKEKESKRKKSTFGQHLTSVETPFLECLDAGIPYQNRRKKVTASRRCDLSVSTLRNFLSRIRVFRGSVSTLRRKISIYSSFRLGTGSA
QSIESAAALASRPQEETIEQNVLNPPGFAPQTQENKKLEDLVGAFIAESSNRTTKLEEAVFAINTTVNGHGAAIKNIETQLGQLVSVVSTMNKGKAPAEQEKTQMEYCKA
ITVHQEEAEEEPESEDYETPTGEAEEDTSADEAEKPNLEPPIPSPTLMEMVDWSYSAILELIGCSGREKMQRKEKESKRKKSTFGQHLTSVETSFLECLDAGIPYQNRRK
KVETNQSQVGEGASLVEQAAMVSLFTDVAIRPSLKGAGMGAVVLNNRGHIVAAMEFFEGASLSVMAAEVKAIVEGLRLLQRMEITHANVHSNSSNAIKMINGEIPIMSEV
YHWVRQIRVMGTSFQELSFTHVSRECNRQADLLAKHALDHRNSMLWIGNVPQQITSMSGSTHCTCNALSFVT