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Spg030018 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030018
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription initiation factor IIE subunit beta
Genome locationscaffold6:8654011..8671783
RNA-Seq ExpressionSpg030018
SyntenySpg030018
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0005673 - transcription factor TFIIE complex (cellular component)
InterPro domainsIPR016656 - Transcription initiation factor TFIIE, beta subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452012.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo]1.8e-3857.4Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKDAYP+++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

XP_011653191.1 general transcription factor IIE subunit 2 [Cucumis sativus]2.4e-3856.8Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYL++KFPEGIAVIDLKDAYP+++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

XP_022136771.1 general transcription factor IIE subunit 2-like [Momordica charantia]3.5e-3755.62Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+V+DSLRNNPKVHYDGRRF+YKSKHDLKDK+Q+LYLI+KFPEGIAVIDLKD+YPT++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

XP_022984812.1 general transcription factor IIE subunit 2-like [Cucurbita maxima]7.7e-3755.62Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+V+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKD+YP+++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQ++AS K KPKKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

XP_038906431.1 general transcription factor IIE subunit 2-like [Benincasa hispida]7.7e-3756.21Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+V+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKDAYP+++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQH+AS K K KKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

TrEMBL top hitse value%identityAlignment
A0A0A0KWU5 Transcription initiation factor IIE subunit beta1.2e-3856.8Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYL++KFPEGIAVIDLKDAYP+++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

A0A1S3BS95 Transcription initiation factor IIE subunit beta8.9e-3957.4Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKDAYP+++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

A0A5A7TNR4 Transcription initiation factor IIE subunit beta8.9e-3957.4Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKDAYP+++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

A0A6J1C4F9 Transcription initiation factor IIE subunit beta1.7e-3755.62Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+V+DSLRNNPKVHYDGRRF+YKSKHDLKDK+Q+LYLI+KFPEGIAVIDLKD+YPT++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQH+AS K KPKKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

A0A6J1J372 Transcription initiation factor IIE subunit beta3.8e-3755.62Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        DINSNK+V+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQ+LYLI+KFPEGIAVIDLKD+YP+++EDLQ                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI
                                   MKP  NTAKRRANAQ++AS K KPKKKKQEISKRTKLTNAH+
Subjt:  ---------------------------MKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNAHI

SwissProt top hitse value%identityAlignment
Q0WWE3 Cytochrome b-c1 complex subunit 6-1, mitochondrial9.0e-0470.37Show/hide
Query:  DEELVDQKRYLLEACKPKRVKPLLDYQ
        D+E+VD K+YL E+CKPK VKPLL+YQ
Subjt:  DEELVDQKRYLLEACKPKRVKPLLDYQ

Q9SJV7 Cytochrome b-c1 complex subunit 6-2, mitochondrial6.9e-0470.37Show/hide
Query:  DEELVDQKRYLLEACKPKRVKPLLDYQ
        +E++VDQKRY  E+CKPK VKPLL+YQ
Subjt:  DEELVDQKRYLLEACKPKRVKPLLDYQ

Arabidopsis top hitse value%identityAlignment
AT1G15120.2 Ubiquinol-cytochrome C reductase hinge protein4.9e-0557.58Show/hide
Query:  VSLRWTDEELVDQKRYLLEACKPKRVKPLLDYQ
        ++    D+E+VD K+YL E+CKPK VKPLL+YQ
Subjt:  VSLRWTDEELVDQKRYLLEACKPKRVKPLLDYQ

AT2G01090.1 Ubiquinol-cytochrome C reductase hinge protein4.9e-0570.37Show/hide
Query:  DEELVDQKRYLLEACKPKRVKPLLDYQ
        +E++VDQKRY  E+CKPK VKPLL+YQ
Subjt:  DEELVDQKRYLLEACKPKRVKPLLDYQ

AT2G01090.2 Ubiquinol-cytochrome C reductase hinge protein4.9e-0570.37Show/hide
Query:  DEELVDQKRYLLEACKPKRVKPLLDYQ
        +E++VDQKRY  E+CKPK VKPLL+YQ
Subjt:  DEELVDQKRYLLEACKPKRVKPLLDYQ

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit2.0e-2744.38Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        D+++NK+V+DSLR NPK HYDGRRFSYK+ HD+ DKNQ+L L++K+ +GIAV+DLKDAYP ++EDL+                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  -------------------------MKPEANTAKRRANAQ-HLASLKQK-PKKKKQEISKRTKLTNAHI
                                 +KP  NTA+RRA AQ H  S K K  KKKKQEISKRTKLTNAH+
Subjt:  -------------------------MKPEANTAKRRANAQ-HLASLKQK-PKKKKQEISKRTKLTNAHI

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit2.9e-2138.01Show/hide
Query:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------
        D+++NK+V+DSLR NPKVHYDGRRFSYK+ H++KDK Q+L  + K  + I V DLKDAYP ++EDL+                                 
Subjt:  DINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQ---------------------------------

Query:  --------------------------MKPEANTAKRRANAQHLASLKQKP---KKKKQEISKRTKLTNAHI
                                  +KP  N A+RRA A+ L  +  KP   KKKK+EI+ RTKLTN+H+
Subjt:  --------------------------MKPEANTAKRRANAQHLASLKQKP---KKKKQEISKRTKLTNAHI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATGCGATATAAATTCCAACAAATCTGTTTATGACAGTCTGCGGAATAACCCAAAGGTCCACTATGATGGGAGACGTTTCTCATACAAGTCCAAGCATGACCTGAA
GGATAAGAACCAAGTTCTATACTTGATACAGAAATTTCCAGAAGGCATTGCTGTCATTGATCTGAAGGATGCTTATCCAACCATTATTGAAGACTTGCAAATGAAGCCTG
AAGCGAACACTGCAAAGAGGCGTGCCAATGCACAACACTTGGCGTCCTTGAAACAGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCA
CATATTCAAGTTCCTTTAAATAGTTTCCAGCAAGGAATCGGGTTTGTTTTGGTAAGTTTAAGGTGGACGGATGAAGAACTCGTTGACCAGAAGAGGTATCTTTTAGAAGC
TTGCAAGCCCAAGCGTGTGAAACCACTACTTGATTATCAGGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTATGCGATATAAATTCCAACAAATCTGTTTATGACAGTCTGCGGAATAACCCAAAGGTCCACTATGATGGGAGACGTTTCTCATACAAGTCCAAGCATGACCTGAA
GGATAAGAACCAAGTTCTATACTTGATACAGAAATTTCCAGAAGGCATTGCTGTCATTGATCTGAAGGATGCTTATCCAACCATTATTGAAGACTTGCAAATGAAGCCTG
AAGCGAACACTGCAAAGAGGCGTGCCAATGCACAACACTTGGCGTCCTTGAAACAGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCA
CATATTCAAGTTCCTTTAAATAGTTTCCAGCAAGGAATCGGGTTTGTTTTGGTAAGTTTAAGGTGGACGGATGAAGAACTCGTTGACCAGAAGAGGTATCTTTTAGAAGC
TTGCAAGCCCAAGCGTGTGAAACCACTACTTGATTATCAGGTATAG
Protein sequenceShow/hide protein sequence
MLCDINSNKSVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQVLYLIQKFPEGIAVIDLKDAYPTIIEDLQMKPEANTAKRRANAQHLASLKQKPKKKKQEISKRTKLTNA
HIQVPLNSFQQGIGFVLVSLRWTDEELVDQKRYLLEACKPKRVKPLLDYQV