CuGenDBv2

Gene ID	Spg030035
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Regulator of chromosome condensation (RCC1) family protein
Genome location	scaffold6:9209322..9215002
RNA-Seq Expression	Spg030035
Synteny	Spg030035
Gene Ontology terms	NA
InterPro domains	IPR000408 - Regulator of chromosome condensation, RCC1 IPR009091 - Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146506.1 probable E3 ubiquitin-protein ligase HERC4 [Cucumis sativus]

2.1e-47

85.47

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Query:  MNKIENRLWRKMIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWA
        MNKI   LWR+MI GIRI+AREQRR +SII FGRRCI SRAVMSFGDGSHGAIGLPTSLTGIGG+AYEPTTVPGLP  VT+VAAGHYHSLA+DSQG LWA
Subjt:  MNKIENRLWRKMIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWA

Query:  WGRDHEAQLGRGFDSPR
        WGRDHEAQLGRGF SPR
Subjt:  WGRDHEAQLGRGFDSPR

XP_022136857.1 secretion-regulating guanine nucleotide exchange factor [Momordica charantia]

1.6e-47

90.57

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Query:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        MIRGIRI+AR Q RAVSI+P+GRRCICS AVMSFGDGSHGAIGLPTS+TGIGGAAYEP TVPGLPPDVTSVAAGHYHSLAVDSQG LWAWGRDHEAQLGR
Subjt:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

Query:  GFDSPR
        GF SPR
Subjt:  GFDSPR

XP_022929402.1 ultraviolet-B receptor UVR8 [Cucurbita moschata]

3.0e-46

90.57

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Query:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        MIRGIRI+A EQRRA+SIIPFGRRC+ SRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVP LPPDVTSVAAGHYHSLA+DSQG LWAWGRD EAQLGR
Subjt:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

Query:  GFDSPR
        GF SPR
Subjt:  GFDSPR

XP_022984599.1 ultraviolet-B receptor UVR8 [Cucurbita maxima]

2.7e-47

91.51

Show/hide

Query:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        MIRGIRI+A EQRRA+SIIPFGRRC+ SRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLA+DSQG LWAWGRD EAQLGR
Subjt:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

Query:  GFDSPR
        GF SPR
Subjt:  GFDSPR

XP_038905737.1 ultraviolet-B receptor UVR8 [Benincasa hispida]

2.7e-47

91.51

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Query:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        MIRGIRI+A+E +RAVSIIPF RRCI SRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTS+AAGHYHSLAVDSQG LWAWGRDHEAQLGR
Subjt:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

Query:  GFDSPR
        GF SPR
Subjt:  GFDSPR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUK9 Uncharacterized protein

1.0e-47

85.47

Show/hide

Query:  MNKIENRLWRKMIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWA
        MNKI   LWR+MI GIRI+AREQRR +SII FGRRCI SRAVMSFGDGSHGAIGLPTSLTGIGG+AYEPTTVPGLP  VT+VAAGHYHSLA+DSQG LWA
Subjt:  MNKIENRLWRKMIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWA

Query:  WGRDHEAQLGRGFDSPR
        WGRDHEAQLGRGF SPR
Subjt:  WGRDHEAQLGRGFDSPR

A0A5D3CZE0 Putative E3 ubiquitin-protein ligase HERC4

6.7e-44

85.85

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Query:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        MI G+RI+AREQ+R +SII FG+RCI SRAVMSFGDGSHGAIGLPTSLTG+GGAAYEPTTVPGLP  VTSVAAGHYHSLAVDSQG LWAWGRDHEAQLGR
Subjt:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

Query:  GFDSPR
        GF S R
Subjt:  GFDSPR

A0A6J1C6L5 secretion-regulating guanine nucleotide exchange factor

7.6e-48

90.57

Show/hide

Query:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        MIRGIRI+AR Q RAVSI+P+GRRCICS AVMSFGDGSHGAIGLPTS+TGIGGAAYEP TVPGLPPDVTSVAAGHYHSLAVDSQG LWAWGRDHEAQLGR
Subjt:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

Query:  GFDSPR
        GF SPR
Subjt:  GFDSPR

A0A6J1EMP4 ultraviolet-B receptor UVR8

1.4e-46

90.57

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Query:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        MIRGIRI+A EQRRA+SIIPFGRRC+ SRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVP LPPDVTSVAAGHYHSLA+DSQG LWAWGRD EAQLGR
Subjt:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

Query:  GFDSPR
        GF SPR
Subjt:  GFDSPR

A0A6J1JB03 ultraviolet-B receptor UVR8

1.3e-47

91.51

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Query:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        MIRGIRI+A EQRRA+SIIPFGRRC+ SRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLA+DSQG LWAWGRD EAQLGR
Subjt:  MIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

Query:  GFDSPR
        GF SPR
Subjt:  GFDSPR

SwissProt top hits

e value

%identity

Alignment

D3ZGQ5 Serine/threonine-protein kinase Nek8

2.9e-04

40.51

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Query:  CICSRA-VMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPG-LPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRG
        C+  R  +M+FG GS+G +G   SLT I     +PT V   L  ++  VA G  H LA+ + G L+AWGR    +LG G
Subjt:  CICSRA-VMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPG-LPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRG

F2Z461 E3 ISG15--protein ligase Herc6

2.7e-05

34.57

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Query:  ICSRA-VMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPP-DVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDS
        +C +  V ++G GS G +G+          ++ PT +  L    +  V+ GHYHSLA+   G +++WGR+ E QLG G +S
Subjt:  ICSRA-VMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPP-DVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDS

Q91ZR4 Serine/threonine-protein kinase Nek8

6.5e-04

39.24

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Query:  CICSRA-VMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPG-LPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRG
        C+  R  +M+FG GS+G +G   +LT I     +PT V   L  ++  VA G  H LA+ + G L+AWGR    +LG G
Subjt:  CICSRA-VMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPG-LPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRG

Arabidopsis top hits

e value

%identity

Alignment

AT5G08710.1 Regulator of chromosome condensation (RCC1) family protein

2.5e-06

32.91

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Query:  SRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR
        +R V + G    G +G    ++ +   A +P  V GL  D+  ++AG+YHS A+   G L+ WG++   QLG G  + R
Subjt:  SRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR

AT5G16040.1 Regulator of chromosome condensation (RCC1) family protein

3.6e-05

44.9

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Query:  PTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR
        P  V GL  +V  +A G +H+LA+   G LWAWG +   QLG G   PR
Subjt:  PTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR

AT5G48330.1 Regulator of chromosome condensation (RCC1) family protein

1.8e-20

63.01

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Query:  RAVMSFGDGSHGAIGL-PTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        R VMSFGDG+ GA+GL  +S+ G+G  AYEPT V  LP D++S++AGHYHSLAV S G +WAWGR+ E QLGR
Subjt:  RAVMSFGDGSHGAIGL-PTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

AT5G48330.2 Regulator of chromosome condensation (RCC1) family protein

1.8e-20

63.01

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Query:  RAVMSFGDGSHGAIGL-PTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR
        R VMSFGDG+ GA+GL  +S+ G+G  AYEPT V  LP D++S++AGHYHSLAV S G +WAWGR+ E QLGR
Subjt:  RAVMSFGDGSHGAIGL-PTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGR

AT5G60870.1 Regulator of chromosome condensation (RCC1) family protein

5.1e-04

36.51

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Query:  GAIGL-PTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRG
        G +GL P      GG    P+ V  L   V SV+ G + ++A+  +G+LW WG +   +LGRG
Subjt:  GAIGL-PTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRG

Sequences

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CDS sequence

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ATGAACAAAATTGAGAACCGATTATGGAGAAAGATGATTCGTGGAATTCGAATTATAGCGAGGGAGCAGAGAAGGGCTGTCTCGATCATCCCCTTCGGAAGAAGATGTAT
ATGCAGCAGGGCGGTTATGAGCTTTGGGGATGGTAGCCATGGCGCAATCGGCTTGCCCACTTCGCTCACGGGCATTGGTGGCGCCGCCTACGAGCCCACCACCGTCCCGG
GGCTTCCTCCCGATGTTACCAGTGTAGCCGCAGGGCACTATCACTCTCTCGCTGTCGATTCGCAAGGCCGTCTCTGGGCTTGGGGCAGAGACCATGAAGCGCAGCTTGGC
CGGGGCTTTGATTCCCCTAGGTAG

mRNA sequence

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Protein sequence

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MNKIENRLWRKMIRGIRIIAREQRRAVSIIPFGRRCICSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTTVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLG
RGFDSPR

Spg030035 (gene) of Sponge gourd (cylindrica) v1 genome