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Spg030057 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030057
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTetratricopeptide-like helical
Genome locationscaffold6:10958794..10963913
RNA-Seq ExpressionSpg030057
SyntenySpg030057
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]4.0e-2354.03Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRALH
        MSVSLEALAMAGI SNEWAMDAEEW RN E+END+PPHLLADED D+D++  ST + Y FP  GF       +D G   ++C    +    K ++KRA +
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRALH

Query:  CLSSVGIMVTTIVGFLMASIERIL
         +SSV I+V TI+GFL+  I +I+
Subjt:  CLSSVGIMVTTIVGFLMASIERIL

KAG6600647.1 hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia]9.3e-2861.29Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRALH
        MSVSLEALAMAGIDSNE AMDAEEW RN EME +IPPHLLADED +EDE   ST    KFP T      CC KD+GV GV C+P  ++H RKI +KR L+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRALH

Query:  CLSSVGIMVTTIVGFLMASIERIL
        CLSS+ I+ + +VGFLM    +I+
Subjt:  CLSSVGIMVTTIVGFLMASIERIL

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-2555.91Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGF---LHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKR
        MSVSLEALAMAGI SNEWAMDAEEW RN E+END+PPHLLADED D+D++  ST + Y FP  GF   LHR    +D G D ++C    +    K ++KR
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGF---LHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKR

Query:  ALHCLSSVGIMVTTIVGFLMASIERIL
        A + +SSV I+V TI+GFL+  I +I+
Subjt:  ALHCLSSVGIMVTTIVGFLMASIERIL

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]3.7e-1650Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMEND-IPPHLLADEDEDED-ESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRA
        MSVSLEALAMAGIDSNEW MDA+EW RN   E D +PPHLLADE++DED E   ST + Y F   G        +D   DG        +   K+I+KRA
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMEND-IPPHLLADEDEDED-ESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRA

Query:  LHCLSSVGIMVTTIVGFLMASIERIL
         + ++SV I+V TI+GFLM    +I+
Subjt:  LHCLSSVGIMVTTIVGFLMASIERIL

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.2e-3063.71Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRALH
        MSVSLEALAMAGIDSNEWAMDAEEW RN EME DIPPHLLADED++EDE   ST    KFP T      CC KDDGV GV C+P  ++H RKI +KR L+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRALH

Query:  CLSSVGIMVTTIVGFLMASIERIL
        CLSS+ I+ + +VGFLM    +I+
Subjt:  CLSSVGIMVTTIVGFLMASIERIL

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein1.5e-1083.67Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNT-EMEND--IPPHLLADEDED
        M VSLEALAMAGIDSNEWAMDAEEW  NT +MEND  IPPHLLADEDE+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNT-EMEND--IPPHLLADEDED

A0A0A0KWE7 Uncharacterized protein2.9e-1951.11Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMEND-IPPHLLADEDEDED---ESFPSTGNYYKFPTTGFLH----RHC---CGKDDGVDGVYCNPVTIFH
        MSVSLEALAMAGIDSNEWAMDAEEW RN   E D +PPHLLADE++DED       ST + Y FP  G       R C    G   G+ G++C+      
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMEND-IPPHLLADEDEDED---ESFPSTGNYYKFPTTGFLH----RHC---CGKDDGVDGVYCNPVTIFH

Query:  FRKIIKKRALHCLSSVGIMVTTIVGFLMASIERIL
          K+I+KRA + +SSV I+V TI+GFLM    +I+
Subjt:  FRKIIKKRALHCLSSVGIMVTTIVGFLMASIERIL

A0A5A7TS68 Tetratricopeptide-like helical3.0e-1652.1Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMEND-IPPHLLADEDEDED-ESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRA
        MSVSLEALAMAGIDSNEW MDA+EW RN   E D +PPHLLADE++DED E   ST + Y F   G        +D   DG +      +   K+I+KRA
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMEND-IPPHLLADEDEDED-ESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRA

Query:  LHCLSSVGIMVTTIVGFLM
         + ++SV I+V TI+GFLM
Subjt:  LHCLSSVGIMVTTIVGFLM

A0A5D3CZU0 Tetratricopeptide-like helical1.8e-1650Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMEND-IPPHLLADEDEDED-ESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRA
        MSVSLEALAMAGIDSNEW MDA+EW RN   E D +PPHLLADE++DED E   ST + Y F   G        +D   DG        +   K+I+KRA
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMEND-IPPHLLADEDEDED-ESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRA

Query:  LHCLSSVGIMVTTIVGFLMASIERIL
         + ++SV I+V TI+GFLM    +I+
Subjt:  LHCLSSVGIMVTTIVGFLMASIERIL

A0A6J1FX98 uncharacterized protein LOC1114478805.7e-3163.71Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRALH
        MSVSLEALAMAGIDSNEWAMDAEEW RN EME DIPPHLLADED++EDE   ST    KFP T      CC KDDGV GV C+P  ++H RKI +KR L+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRALH

Query:  CLSSVGIMVTTIVGFLMASIERIL
        CLSS+ I+ + +VGFLM    +I+
Subjt:  CLSSVGIMVTTIVGFLMASIERIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein2.6e-0446.67Show/hide
Query:  LEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDE
        +EALAMAG+D  EW +  EEW      E+ +P HLLAD+ ++E++
Subjt:  LEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCGATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGGAAGAAATACTGAAATGGAGAACGACATTCCGCC
ACATTTATTAGCCGACGAAGACGAAGACGAAGACGAAAGCTTTCCGAGTACTGGCAATTACTATAAGTTTCCGACCACCGGATTCCTCCACCGCCATTGCTGCGGAAAAG
ATGACGGTGTTGATGGTGTGTACTGCAATCCGGTGACCATTTTCCATTTCAGAAAAATCATAAAGAAGAGAGCTCTGCATTGCTTGAGTTCAGTGGGAATAATGGTGACA
ACTATTGTGGGGTTCCTTATGGCTTCCATCGAAAGAATTCTAGACACAGCTGATCGGCATGATAGGCAATCGGGAAATGAATACTCGAAGCCTGGAAGAAATATTGCCAA
ATACAAGAAGCCAGCTCACAATGAACTAGGATGTGGTCTAAAGATTCCGAACTGTTATAGCAGAGGACACACCAATTCGGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCGATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGGAAGAAATACTGAAATGGAGAACGACATTCCGCC
ACATTTATTAGCCGACGAAGACGAAGACGAAGACGAAAGCTTTCCGAGTACTGGCAATTACTATAAGTTTCCGACCACCGGATTCCTCCACCGCCATTGCTGCGGAAAAG
ATGACGGTGTTGATGGTGTGTACTGCAATCCGGTGACCATTTTCCATTTCAGAAAAATCATAAAGAAGAGAGCTCTGCATTGCTTGAGTTCAGTGGGAATAATGGTGACA
ACTATTGTGGGGTTCCTTATGGCTTCCATCGAAAGAATTCTAGACACAGCTGATCGGCATGATAGGCAATCGGGAAATGAATACTCGAAGCCTGGAAGAAATATTGCCAA
ATACAAGAAGCCAGCTCACAATGAACTAGGATGTGGTCTAAAGATTCCGAACTGTTATAGCAGAGGACACACCAATTCGGGCTAA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAEEWGRNTEMENDIPPHLLADEDEDEDESFPSTGNYYKFPTTGFLHRHCCGKDDGVDGVYCNPVTIFHFRKIIKKRALHCLSSVGIMVT
TIVGFLMASIERILDTADRHDRQSGNEYSKPGRNIAKYKKPAHNELGCGLKIPNCYSRGHTNSG