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Spg030058 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030058
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold6:11322826..11323443
RNA-Seq ExpressionSpg030058
SyntenySpg030058
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA14207.1 PREDICTED: ribonuclease H At1g65750 family [Prunus dulcis]8.2e-0438.46Show/hide
Query:  KVNVDATWSSSSFSTDIGVICKDSKGLILGASTFFLDLEFSLSMAELRVILERVKFVLSLGDANLLVESDCLQAVDLV
        K+N D  W   S S  IGV+ KD  G  L   +     + +L MAE    LER +F   +GD  +  ESDCL+AV  +
Subjt:  KVNVDATWSSSSFSTDIGVICKDSKGLILGASTFFLDLEFSLSMAELRVILERVKFVLSLGDANLLVESDCLQAVDLV
XP_030930680.1 uncharacterized protein LOC115956442 [Quercus lobata]3.7e-0435Show/hide
Query:  FWKVNVDATWSSSSFSTDIGVICKDSKGLILGASTFFLDLEFSLSMAELRVILERVKFVLSLGDANLLVESDCLQAVDLV
        F+KVNVD   S     + IGV+ +DS+G ++ AS   L   FS+ + E   + E V   L +G ++++VESD L  +  +
Subjt:  FWKVNVDATWSSSSFSTDIGVICKDSKGLILGASTFFLDLEFSLSMAELRVILERVKFVLSLGDANLLVESDCLQAVDLV
TrEMBL top hitse value%identityAlignment
A0A5E4EEH1 PREDICTED: ribonuclease H At1g65750 family4.0e-0438.46Show/hide
Query:  KVNVDATWSSSSFSTDIGVICKDSKGLILGASTFFLDLEFSLSMAELRVILERVKFVLSLGDANLLVESDCLQAVDLV
        K+N D  W   S S  IGV+ KD  G  L   +     + +L MAE    LER +F   +GD  +  ESDCL+AV  +
Subjt:  KVNVDATWSSSSFSTDIGVICKDSKGLILGASTFFLDLEFSLSMAELRVILERVKFVLSLGDANLLVESDCLQAVDLV
A0A6J1BQ49 uncharacterized protein LOC1110047865.2e-0442.31Show/hide
Query:  KVNVDATWSSSSFSTDIGVICKDSKGLILGASTFFLDLEFSLSMAELRVILERVKFVLSLGDANLLVESDCLQAVDLV
        KVN DA   S+  ST +G+I +D  G++L A + FL +  +   AE+R ILE +K   S     L+VESDC +A+ LV
Subjt:  KVNVDATWSSSSFSTDIGVICKDSKGLILGASTFFLDLEFSLSMAELRVILERVKFVLSLGDANLLVESDCLQAVDLV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTACAGTTCATATCCTTTTTAACTGTATTCGAGCTAAAGGGATTTGGGATCTAACCTTTCATCACGATATTTTGAATGTGGACTTCAATCATATGAACTTCTG
GAAAGTAAATGTTGATGCGACTTGGAGCTCTTCCTCTTTTTCTACCGATATTGGAGTAATTTGCAAGGATTCTAAAGGATTAATTCTTGGTGCTTCAACTTTTTTCCTTG
ATTTGGAGTTTTCTCTGTCGATGGCTGAACTTAGGGTTATTCTCGAGAGAGTGAAATTTGTGTTATCCTTGGGCGATGCTAATCTGTTAGTGGAGTCTGATTGTCTTCAA
GCTGTCGATTTGGTTTTTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATCTACAGTTCATATCCTTTTTAACTGTATTCGAGCTAAAGGGATTTGGGATCTAACCTTTCATCACGATATTTTGAATGTGGACTTCAATCATATGAACTTCTG
GAAAGTAAATGTTGATGCGACTTGGAGCTCTTCCTCTTTTTCTACCGATATTGGAGTAATTTGCAAGGATTCTAAAGGATTAATTCTTGGTGCTTCAACTTTTTTCCTTG
ATTTGGAGTTTTCTCTGTCGATGGCTGAACTTAGGGTTATTCTCGAGAGAGTGAAATTTGTGTTATCCTTGGGCGATGCTAATCTGTTAGTGGAGTCTGATTGTCTTCAA
GCTGTCGATTTGGTTTTTGTGTAG
Protein sequenceShow/hide protein sequence
MESTVHILFNCIRAKGIWDLTFHHDILNVDFNHMNFWKVNVDATWSSSSFSTDIGVICKDSKGLILGASTFFLDLEFSLSMAELRVILERVKFVLSLGDANLLVESDCLQ
AVDLVFV