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Spg030068 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030068
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:8473410..8474711
RNA-Seq ExpressionSpg030068
SyntenySpg030068
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]8.4e-1325.9Show/hide
Query:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNHNGDSERRPT-------WTPIPEGSWKLSCDATWN
        + ++ D+ ++ S+++ W+IW+ RNR     +  +++ + + +   I   + +        R++ N       R         W+  P   WKL+ DA+W+
Subjt:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNHNGDSERRPT-------WTPIPEGSWKLSCDATWN

Query:  EAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVV
        E +  GG+GWI  D RG +V+AG   I    +I  LE + I  G++ I    ++ + +ESD+++V+
Subjt:  EAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVV

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.9e-1529.09Show/hide
Query:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNH---NGDSERRPTWTPIPEGSWKLSCDATWNEAKM
        M+   ++   RS+I+ W+IW+ RN+       P    +Q  + R I    G     +     +  H     +      W P    SWKL+ +A W     
Subjt:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNH---NGDSERRPTWTPIPEGSWKLSCDATWNEAKM

Query:  RGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNEL
         GG+GWI RD +G ++ A  R I     I +LE +AIC+G+R+I       + +ESD+L+ ++ L
Subjt:  RGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNEL

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]9.0e-1527.86Show/hide
Query:  LKKNGWAVPDYSEIFWKGEGMELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRY--NHNGDSERRPTWTP
        + +  W   +Y E  W    M+   ++   RS+I+  +IW+ RN+            +Q  + R I    G++   +   +  +     GD+  R  W P
Subjt:  LKKNGWAVPDYSEIFWKGEGMELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRY--NHNGDSERRPTWTP

Query:  IPEGSWKLSCDATWNEAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNELVYFIKEAQSLLSLKII
            SWKL+ DA W       G+GWI RD +G ++  G R I     I +LE +AIC+G+R+I       + +ESD+L+ ++ L   +K     + LK+ 
Subjt:  IPEGSWKLSCDATWNEAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNELVYFIKEAQSLLSLKII

Query:  G
        G
Subjt:  G

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.5e-1428.14Show/hide
Query:  KNGWAVPDYSEIFWKGEGMELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRY--NHNGDSERRPTWTPIP
        +  W   +Y E  W    M+   ++   RS+I+  +IW+ RN+            +Q  + R I    G++   +   +  +     GD+  R  W P  
Subjt:  KNGWAVPDYSEIFWKGEGMELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRY--NHNGDSERRPTWTPIP

Query:  EGSWKLSCDATWNEAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNELVYFIKEAQSLLSLKIIG
          SWKL+ DA W       G+GWI RD +G ++  G R I     I +LE +AIC+G+R+I       + +ESD+L+ ++ L   +K     + LK+ G
Subjt:  EGSWKLSCDATWNEAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNELVYFIKEAQSLLSLKIIG

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.0e-1330.19Show/hide
Query:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNHNGDSERRPTWTPIPEGSWKLSCDATWNEAKMRGG
        ++   D+ L   LI  W IW++RN +    +  +  TM QQ+++ +      E++YQ+       H      +  W P P   W L+ DA+W+++  RGG
Subjt:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNHNGDSERRPTWTPIPEGSWKLSCDATWNEAKMRGG

Query:  VGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPS-SFQASVRVESDALQV
        +GWI R W G +V+AG R +     ++ LEA AI +G+R++ +      + +E+D+ +V
Subjt:  VGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPS-SFQASVRVESDALQV

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.3e-1529.09Show/hide
Query:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNH---NGDSERRPTWTPIPEGSWKLSCDATWNEAKM
        M+   ++   RS+I+ W+IW+ RN+       P    +Q  + R I    G     +     +  H     +      W P    SWKL+ +A W     
Subjt:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNH---NGDSERRPTWTPIPEGSWKLSCDATWNEAKM

Query:  RGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNEL
         GG+GWI RD +G ++ A  R I     I +LE +AIC+G+R+I       + +ESD+L+ ++ L
Subjt:  RGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNEL

A0A6J1CQG0 uncharacterized protein LOC1110132164.1e-1325.9Show/hide
Query:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNHNGDSERRPT-------WTPIPEGSWKLSCDATWN
        + ++ D+ ++ S+++ W+IW+ RNR     +  +++ + + +   I   + +        R++ N       R         W+  P   WKL+ DA+W+
Subjt:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNHNGDSERRPT-------WTPIPEGSWKLSCDATWN

Query:  EAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVV
        E +  GG+GWI  D RG +V+AG   I    +I  LE + I  G++ I    ++ + +ESD+++V+
Subjt:  EAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVV

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.4e-1527.86Show/hide
Query:  LKKNGWAVPDYSEIFWKGEGMELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRY--NHNGDSERRPTWTP
        + +  W   +Y E  W    M+   ++   RS+I+  +IW+ RN+            +Q  + R I    G++   +   +  +     GD+  R  W P
Subjt:  LKKNGWAVPDYSEIFWKGEGMELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRY--NHNGDSERRPTWTP

Query:  IPEGSWKLSCDATWNEAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNELVYFIKEAQSLLSLKII
            SWKL+ DA W       G+GWI RD +G ++  G R I     I +LE +AIC+G+R+I       + +ESD+L+ ++ L   +K     + LK+ 
Subjt:  IPEGSWKLSCDATWNEAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNELVYFIKEAQSLLSLKII

Query:  G
        G
Subjt:  G

A0A6J1DNV9 uncharacterized protein LOC1110224034.8e-1430.19Show/hide
Query:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNHNGDSERRPTWTPIPEGSWKLSCDATWNEAKMRGG
        ++   D+ L   LI  W IW++RN +    +  +  TM QQ+++ +      E++YQ+       H      +  W P P   W L+ DA+W+++  RGG
Subjt:  MELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNHNGDSERRPTWTPIPEGSWKLSCDATWNEAKMRGG

Query:  VGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPS-SFQASVRVESDALQV
        +GWI R W G +V+AG R +     ++ LEA AI +G+R++ +      + +E+D+ +V
Subjt:  VGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPS-SFQASVRVESDALQV

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X27.4e-1528.14Show/hide
Query:  KNGWAVPDYSEIFWKGEGMELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRY--NHNGDSERRPTWTPIP
        +  W   +Y E  W    M+   ++   RS+I+  +IW+ RN+            +Q  + R I    G++   +   +  +     GD+  R  W P  
Subjt:  KNGWAVPDYSEIFWKGEGMELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRY--NHNGDSERRPTWTPIP

Query:  EGSWKLSCDATWNEAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNELVYFIKEAQSLLSLKIIG
          SWKL+ DA W       G+GWI RD +G ++  G R I     I +LE +AIC+G+R+I       + +ESD+L+ ++ L   +K     + LK+ G
Subjt:  EGSWKLSCDATWNEAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNELVYFIKEAQSLLSLKIIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAAAGGGGGCCGAGAGATCTTATTGAGGAATTGGCCCTCTTTTGGGCCTCTTACAGTTGGGCTGAAGAAGAATGGATGGGCTGTCCCCGACTACAGTGAGATATT
TTGGAAAGGAGAAGGAATGGAGCTTATGGATGACCAAAGTCTAAGTAGAAGCTTAATAGTGTGCTGGAAAATTTGGGACTACCGCAACAGAATCAGTCATTCAAATCAGA
TTCCCAACCAAGAGACAATGCAGCAACAAGTTAGCAGAGCCATTGAGGAATACCTAGGAGAAGAAAACACATACCAAGCGGCGGTGAGAACCAGGTACAATCACAACGGC
GACTCCGAACGACGACCCACCTGGACGCCGATACCAGAAGGTTCGTGGAAGCTCAGCTGCGATGCGACATGGAATGAAGCAAAAATGCGTGGTGGAGTTGGATGGATTTT
CAGAGATTGGAGAGGAATGATGGTGATGGCAGGTTACCGATCGATTAATCGTCCATGGAAGATCCAGTGGCTTGAAGCTTTAGCTATCTGTGATGGTGTGAGATCGATAC
CCTCGTCTTTTCAGGCATCCGTACGTGTGGAGAGTGATGCTCTTCAAGTGGTGAATGAGTTGGTCTACTTCATTAAAGAAGCCCAAAGTCTCCTTTCTTTGAAAATTATT
GGGCCTGTATTCCATGTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAAAGGGGGCCGAGAGATCTTATTGAGGAATTGGCCCTCTTTTGGGCCTCTTACAGTTGGGCTGAAGAAGAATGGATGGGCTGTCCCCGACTACAGTGAGATATT
TTGGAAAGGAGAAGGAATGGAGCTTATGGATGACCAAAGTCTAAGTAGAAGCTTAATAGTGTGCTGGAAAATTTGGGACTACCGCAACAGAATCAGTCATTCAAATCAGA
TTCCCAACCAAGAGACAATGCAGCAACAAGTTAGCAGAGCCATTGAGGAATACCTAGGAGAAGAAAACACATACCAAGCGGCGGTGAGAACCAGGTACAATCACAACGGC
GACTCCGAACGACGACCCACCTGGACGCCGATACCAGAAGGTTCGTGGAAGCTCAGCTGCGATGCGACATGGAATGAAGCAAAAATGCGTGGTGGAGTTGGATGGATTTT
CAGAGATTGGAGAGGAATGATGGTGATGGCAGGTTACCGATCGATTAATCGTCCATGGAAGATCCAGTGGCTTGAAGCTTTAGCTATCTGTGATGGTGTGAGATCGATAC
CCTCGTCTTTTCAGGCATCCGTACGTGTGGAGAGTGATGCTCTTCAAGTGGTGAATGAGTTGGTCTACTTCATTAAAGAAGCCCAAAGTCTCCTTTCTTTGAAAATTATT
GGGCCTGTATTCCATGTTCCTTGA
Protein sequenceShow/hide protein sequence
MQKGGREILLRNWPSFGPLTVGLKKNGWAVPDYSEIFWKGEGMELMDDQSLSRSLIVCWKIWDYRNRISHSNQIPNQETMQQQVSRAIEEYLGEENTYQAAVRTRYNHNG
DSERRPTWTPIPEGSWKLSCDATWNEAKMRGGVGWIFRDWRGMMVMAGYRSINRPWKIQWLEALAICDGVRSIPSSFQASVRVESDALQVVNELVYFIKEAQSLLSLKII
GPVFHVP