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Spg030070 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030070
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description1-deoxy-D-xylulose 5-phosphate synthase 1
Genome locationscaffold6:12355536..12356685
RNA-Seq ExpressionSpg030070
SyntenySpg030070
Gene Ontology termsGO:0009228 - thiamine biosynthetic process (biological process)
GO:0016114 - terpenoid biosynthetic process (biological process)
GO:0052865 - 1-deoxy-D-xylulose 5-phosphate biosynthetic process (biological process)
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR005475 - Transketolase-like, pyrimidine-binding domain
IPR005477 - Deoxyxylulose-5-phosphate synthase
IPR020826 - Transketolase binding site
IPR029061 - Thiamin diphosphate-binding fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1201887.1 putative 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Morella rubra]2.9e-4391.3Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGLVGADGPTHCG F +TYMACLPNMVVMAPSDEAEL+HMVATAA IDDRPSCFRFPRGNGVGA LPPNYKGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

KAG8080989.1 hypothetical protein GUJ93_ZPchr0007g5541 [Zizania palustris]4.9e-4390.22Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQ+LPVRFA+DRAGLVGADGPTHCG F VTYMACLPNMVVMAPSDEAEL+HMVATAAAIDDRPSCFRFPRGNG+GA+LPPN+KGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

KAG8100416.1 hypothetical protein GUJ93_ZPchr0013g34461 [Zizania palustris]4.9e-4390.22Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQ+LPVRFA+DRAGLVGADGPTHCG F VTYMACLPNMVVMAPSDEAEL+HMVATAAAIDDRPSCFRFPRGNG+GA+LPPN+KGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

XP_012081698.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]4.9e-4391.3Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFALDRAGLVGADGPTHCG F +TYMACLPNMVVMAPSDEAEL+HMVATAAAIDDRPSCFRFPRGNG+GA LPPN KGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

XP_022136899.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Momordica charantia]1.7e-4393.48Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKL VRFALDR GLVGADGPTHCG F +TYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

TrEMBL top hitse value%identityAlignment
A0A061DI40 1-deoxy-D-xylulose-5-phosphate synthase4.1e-4390.22Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGLVGADGPTHCG F +TYMACLPNMVVMAPSDEAEL+HMVATAAAIDDRPSCFRFPRGNG G  LPPNYKGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

A0A061DPM3 1-deoxy-D-xylulose-5-phosphate synthase4.1e-4390.22Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGLVGADGPTHCG F +TYMACLPNMVVMAPSDEAEL+HMVATAAAIDDRPSCFRFPRGNG G  LPPNYKGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

A0A067KD90 1-deoxy-D-xylulose-5-phosphate synthase2.4e-4391.3Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFALDRAGLVGADGPTHCG F +TYMACLPNMVVMAPSDEAEL+HMVATAAAIDDRPSCFRFPRGNG+GA LPPN KGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

A0A6A1UQ26 1-deoxy-D-xylulose-5-phosphate synthase1.4e-4391.3Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGLVGADGPTHCG F +TYMACLPNMVVMAPSDEAEL+HMVATAA IDDRPSCFRFPRGNGVGA LPPNYKGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

A0A6J1C5M2 1-deoxy-D-xylulose-5-phosphate synthase8.2e-4493.48Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKL VRFALDR GLVGADGPTHCG F +TYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

SwissProt top hitse value%identityAlignment
O22567 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic7.2e-4590.22Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGLVGADGPTHCG F VTYMACLPNMVVMAPSDEAEL HMVATAAAIDDRPSCFR+PRGNG+G  LPPNYKG PLEV
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

O78328 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic2.8e-4184.78Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGLVGADGPTHCG F VT+MACLPNMVVMAPSDEAEL H+VATAAAIDDRPSCFR+PRGNG+G  LP   KG PLEV
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

Q38854 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic6.3e-4180.43Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGLVGADGPTHCG F VT+MACLPNM+VMAPSDEA+L +MVATA AIDDRPSCFR+PRGNG+G  LPP  KG P+E+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

Q6NB76 1-deoxy-D-xylulose-5-phosphate synthase9.4e-2966.3Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DV +QKLPVRFA+DRAGLVGADG TH G F   Y+ CLPNMV+MA +DEAEL+HMVAT  AIDDRPS  R+PRG G G  +P    G PLE+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

Q6YU51 Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic4.2e-4589.13Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQ+LPVRFA+DRAGLVGADGPTHCG F V YMACLPNMVVMAP+DEAEL+HMVATAAAIDDRPSCFRFPRGNG+GA+LPPN+KGTPLEV
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

Arabidopsis top hitse value%identityAlignment
AT3G21500.1 1-deoxy-D-xylulose 5-phosphate synthase 12.9e-4180.43Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGL+GADGPTHCG F VT+MACLPNM+VMAPSDEAEL +MVATAAAIDDRPSCFR+ RGNG+G  LPP  KG PL++
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

AT3G21500.2 1-deoxy-D-xylulose 5-phosphate synthase 12.9e-4180.43Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGL+GADGPTHCG F VT+MACLPNM+VMAPSDEAEL +MVATAAAIDDRPSCFR+ RGNG+G  LPP  KG PL++
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

AT4G15560.1 Deoxyxylulose-5-phosphate synthase4.5e-4280.43Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV
        DVDLQKLPVRFA+DRAGLVGADGPTHCG F VT+MACLPNM+VMAPSDEA+L +MVATA AIDDRPSCFR+PRGNG+G  LPP  KG P+E+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEV

AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 32.5e-2454.26Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGN--GVGALLPPNYKGTPLEV
        DVD Q+  VRF +  AGLVG+DGP  CG F + +M+ LPNM+ MAP+DE EL++MVATAA + DRP CFRFPRG+   +  L+P    G P+E+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGN--GVGALLPPNYKGTPLEV

AT5G11380.2 1-deoxy-D-xylulose 5-phosphate synthase 31.9e-2454.17Show/hide
Query:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGN--GVGALLPPNYKGTPLEVRA
        DVD Q+  VRF +  AGLVG+DGP  CG F + +M+ LPNM+ MAP+DE EL++MVATAA + DRP CFRFPRG+   +  L+P    G P+E R+
Subjt:  DVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGN--GVGALLPPNYKGTPLEVRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATTATGGCTGAGAAAACTGATGGAATAAACGATGATGATGTAGACCTTCAAAAACTACCGGTTCGGTTCGCGTTGGATCGAGCGGGTTTGGTCGGTGCCGATGG
ACCGACGCATTGTGGGGTGTTCCACGTTACATACATGGCTTGTTTGCCGAACATGGTGGTGATGGCTCCATCTGATGAAGCTGAACTCATTCACATGGTGGCAACGGCAG
CAGCCATAGACGACAGACCAAGCTGCTTCAGGTTTCCAAGGGGCAATGGAGTTGGAGCTCTTCTTCCTCCAAATTACAAAGGAACCCCTCTTGAGGTTAGAGCATTCAAA
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAATTATGGCTGAGAAAACTGATGGAATAAACGATGATGATGTAGACCTTCAAAAACTACCGGTTCGGTTCGCGTTGGATCGAGCGGGTTTGGTCGGTGCCGATGG
ACCGACGCATTGTGGGGTGTTCCACGTTACATACATGGCTTGTTTGCCGAACATGGTGGTGATGGCTCCATCTGATGAAGCTGAACTCATTCACATGGTGGCAACGGCAG
CAGCCATAGACGACAGACCAAGCTGCTTCAGGTTTCCAAGGGGCAATGGAGTTGGAGCTCTTCTTCCTCCAAATTACAAAGGAACCCCTCTTGAGGTTAGAGCATTCAAA
TAA
Protein sequenceShow/hide protein sequence
MAIMAEKTDGINDDDVDLQKLPVRFALDRAGLVGADGPTHCGVFHVTYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRFPRGNGVGALLPPNYKGTPLEVRAFK