CuGenDBv2

Gene ID	Spg030087
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	18S rRNA aminocarboxypropyltransferase
Genome location	scaffold6:10366862..10373248
RNA-Seq Expression	Spg030087
Synteny	Spg030087
Gene Ontology terms	GO:0000455 - enzyme-directed rRNA pseudouridine synthesis (biological process) GO:0005737 - cytoplasm (cellular component) GO:0106388 - rRNA small subunit aminocarboxypropyltransferase activity (molecular function) GO:1904047 - S-adenosyl-L-methionine binding (molecular function)
InterPro domains	IPR007209 - RNase L inhibitor RLI-like, possible metal-binding domain IPR022968 - 16S/18S rRNA aminocarboxypropyltransferase Tsr3

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022136904.1 ribosome biogenesis protein TSR3 homolog [Momordica charantia]

6.8e-35

86.59

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQSTRGHKF+ ED+CLP+DPANEEE AGPKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

XP_022984901.1 ribosome biogenesis protein TSR3 homolog isoform X1 [Cucurbita maxima]

8.3e-33

84.15

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

XP_022984902.1 ribosome biogenesis protein TSR3 homolog isoform X2 [Cucurbita maxima]

8.3e-33

84.15

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

XP_023551798.1 ribosome biogenesis protein TSR3 homolog [Cucurbita pepo subsp. pepo]

6.3e-33

85.37

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQS+RGHKFV EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

XP_038896612.1 18S rRNA aminocarboxypropyltransferase [Benincasa hispida]

1.3e-33

84.15

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQSTRGHKF+ EDECLP+DPAN+EE   PKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C5M7 18S rRNA aminocarboxypropyltransferase

3.3e-35

86.59

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQSTRGHKF+ ED+CLP+DPANEEE AGPKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

A0A6J1EML6 18S rRNA aminocarboxypropyltransferase

4.0e-33

84.15

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

A0A6J1ETU0 18S rRNA aminocarboxypropyltransferase

4.0e-33

84.15

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

A0A6J1J3E9 18S rRNA aminocarboxypropyltransferase

4.0e-33

84.15

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

A0A6J1J6L0 18S rRNA aminocarboxypropyltransferase

4.0e-33

84.15

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF
        MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAKRCTGRKLARFGLLK+  + S F
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPF

SwissProt top hits

e value

%identity

Alignment

Q12094 18S rRNA aminocarboxypropyltransferase

8.1e-07

42.25

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Query:  NKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLK
        NK    KN  P+RG    GH        + +   N E+   P ++LAMWDF  CD KRC+G+KL R GL+K
Subjt:  NKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLK

Q5HZH2 18S rRNA aminocarboxypropyltransferase

8.1e-07

54.35

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Query:  VDPANEEEQAGP-----KIQLAMWDFGQCDAKRCTGRKLARFGLLK
        V P   E+Q GP        LAMW+ G CD KRCTGRKLAR GL++
Subjt:  VDPANEEEQAGP-----KIQLAMWDFGQCDAKRCTGRKLARFGLLK

Q9UJK0 18S rRNA aminocarboxypropyltransferase

2.0e-05

47.83

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Query:  VDPANEEEQAGP-----KIQLAMWDFGQCDAKRCTGRKLARFGLLK
        V+P   + + GP        LAMW+ G CD +RCTGRKLAR GL++
Subjt:  VDPANEEEQAGP-----KIQLAMWDFGQCDAKRCTGRKLARFGLLK

Arabidopsis top hits

e value

%identity

Alignment

AT5G10070.1 RNase L inhibitor protein-related

1.4e-17

61.76

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Query:  KNHHPRRGQSTRGH--KFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKE
        K++  + G S+RG       EDE LP+D   E+E   PK+QLAMWDFGQCDAKRCTGRKLARF LLKE
Subjt:  KNHHPRRGQSTRGH--KFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKE

AT5G10070.2 RNase L inhibitor protein-related

1.4e-17

61.76

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Query:  KNHHPRRGQSTRGH--KFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKE
        K++  + G S+RG       EDE LP+D   E+E   PK+QLAMWDFGQCDAKRCTGRKLARF LLKE
Subjt:  KNHHPRRGQSTRGH--KFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKE

Sequences

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CDS sequence

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ATGAGCCATAACAAGCCTAGACGCTTCAAAAATCATCATCCCCGTCGCGGACAATCCACTCGAGGCCATAAATTCGTCGCAGAGGACGAGTGTTTGCCAGTCGACCCAGC
CAATGAAGAGGAGCAAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAGCTTGCACGATTTGGCTTGTTGA
AAGAAAGTACCTTATTCTCTCCTTTTCTTTTATTTTCATATTTTTAA

mRNA sequence

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Protein sequence

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MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPFLLFSYF

Spg030087 (gene) of Sponge gourd (cylindrica) v1 genome