; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030115 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030115
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold6:11729342..11731385
RNA-Seq ExpressionSpg030115
SyntenySpg030115
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.6e-3052.17Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHIT+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        E E E  Q   S  R SVFRRL+    +EEST      TRPSAF+RL V  +K      AP
Subjt:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]8.7e-1540.6Show/hide
Query:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD
        IE+++EGW +V  RKK++    ++ESR +++ +R  K+QK K KKK+ + K V  E  +F    + +TLA++ P+ FL D Q E  E V CH ++  E++
Subjt:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD

Query:  DVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS
         +P  S     V  DLS F+++DLLSLPQE K+
Subjt:  DVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.6e-3052.17Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHIT+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        E E E  Q   S  R SVFRRL+    +EEST      TRPSAF+RL V  +K      AP
Subjt:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]1.3e-2951.55Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHIT+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        E E E  Q   +  R SVFRRL+    +EEST      TRPSAF+RL V  +K      AP
Subjt:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]3.7e-0543.24Show/hide
Query:  FCSPQP-ITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS
        F  PQ  +TLA++ P+ FL   Q E  E V CH ++  E++ +P  S     V  DLS F+++DLLSLPQE K+
Subjt:  FCSPQP-ITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]1.3e-2951.55Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHIT+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        E E E  Q   +  R SVFRRL+    +EEST      TRPSAF+RL V  +K      AP
Subjt:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]8.7e-1540.6Show/hide
Query:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD
        IE+++EGW +V  RKK++    ++ESR +++ +R  K+QK K KKK+ + K V  E  +F    + +TLA++ P+ FL D Q E  E V CH ++  E++
Subjt:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD

Query:  DVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS
         +P  S     V  DLS F+++DLLSLPQE K+
Subjt:  DVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.3e-2951.55Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHIT+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        E E E  Q   +  R SVFRRL+    +EEST      TRPSAF+RL V  +K      AP
Subjt:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]8.7e-1540.6Show/hide
Query:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD
        IE+++EGW +V  RKK++    ++ESR +++ +R  K+QK K KKK+ + K V  E  +F    + +TLA++ P+ FL D Q E  E V CH ++  E++
Subjt:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD

Query:  DVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS
         +P  S     V  DLS F+++DLLSLPQE K+
Subjt:  DVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein3.0e-2953.52Show/hide
Query:  KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVF
        KKLL++G+++P +RKGLGYKSPEP+RIT +GK KV D NHITV+EVD  KEKE   QRTS F RI P VAR  VF+RLS+ E E +  Q T +  R S F
Subjt:  KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVF

Query:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        +RL+M S++E+        TRPSAF+RL++  +K   T   P
Subjt:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

A0A5A7TJZ7 Retrotransposon gag protein5.4e-0239.33Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQ
        S+EK  SIE+++EGW +V RRKK+K +  +KESR +R+ +R  K++K K KKK+++ K   E      C     T  E  P R L++ +
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQ

A0A5A7TJZ7 Retrotransposon gag protein6.7e-2952.82Show/hide
Query:  KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVF
        KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D+NHITV+EVD  +E E   QRTS F RI P VAR  VF+RLS+ E E +  Q T +  R SVF
Subjt:  KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVF

Query:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        +RL++  +EE+    T   T+PSAF+RL++  +K   T  AP
Subjt:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

A0A5A7UD46 Uncharacterized protein6.5e-0844.3Show/hide
Query:  EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS
        EE +DF  + + +TLA++FP RFL D Q E    V CH ++  E++ +P  S     V  DLS F++ DLLSLPQE K+
Subjt:  EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.8e-2952.82Show/hide
Query:  KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVF
        KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T +  R S F
Subjt:  KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVF

Query:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        +RL++  +EE+    T   T+PSAF+RL++  +K   T  AP
Subjt:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

A0A5D3BSG5 Uncharacterized protein8.0e-2246.04Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+QK K KKK+R+ K + EE +DF  + + +TLA++FP RFL D Q E    V CH 
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAK
        ++ +E++++P  S     V  DLS F++ DLLSLPQE K
Subjt:  VDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAK

A0A5D3BSG5 Uncharacterized protein1.1e-2851.41Show/hide
Query:  KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVF
        KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D+NHIT++E D  +EKE   QRTS F RI P VARA VF++LS+ E E +  Q T +  R S F
Subjt:  KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVF

Query:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        +RL++  +EE+    T   T+PSAF+RL++  +K   T  AP
Subjt:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

A0A5D3DXC7 Reverse transcriptase domain-containing protein2.3e-2949.07Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        D  S  I +   L   +  KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        E E +  Q T +  + S F+RL++  +EE+    T   T+PSAF+RL++  +K   T  AP
Subjt:  ETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCT
AAAGAAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATA
TAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGA
TTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACTGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATT
TTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGATGCGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCT
AAAGAAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATA
TAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGA
TTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACTGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATT
TTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGATGCGATAA
Protein sequenceShow/hide protein sequence
MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD
DVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQR
LSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEMR