CuGenDBv2

Gene ID	Spg030117
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transcription initiation factor IIE subunit beta
Genome location	scaffold6:8677461..8678881
RNA-Seq Expression	Spg030117
Synteny	Spg030117
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0005673 - transcription factor TFIIE complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR016656 - Transcription initiation factor TFIIE, beta subunit

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008452012.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo]

2.0e-50

92.98

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQ FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

XP_011653191.1 general transcription factor IIE subunit 2 [Cucumis sativus]

2.0e-50

92.98

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQ FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

XP_022136771.1 general transcription factor IIE subunit 2-like [Momordica charantia]

1.7e-49

92.11

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLK  FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

XP_022931511.1 general transcription factor IIE subunit 2-like [Cucurbita moschata]

1.3e-49

92.11

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQ FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

XP_022984812.1 general transcription factor IIE subunit 2-like [Cucurbita maxima]

1.3e-49

92.11

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQ FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWU5 Transcription initiation factor IIE subunit beta

9.7e-51

92.98

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQ FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

A0A1S3BS95 Transcription initiation factor IIE subunit beta

9.7e-51

92.98

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQ FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

A0A5A7TNR4 Transcription initiation factor IIE subunit beta

9.7e-51

92.98

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQ FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

A0A6J1ETU7 Transcription initiation factor IIE subunit beta

6.3e-50

92.11

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQ FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

A0A6J1J372 Transcription initiation factor IIE subunit beta

6.3e-50

92.11

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR
        + + ++ LKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQ FREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKR
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR

Query:  TKLTNAHLPELFKN
        TKLTNAHLPELFKN
Subjt:  TKLTNAHLPELFKN

SwissProt top hits

e value

%identity

Alignment

Q54KJ8 General transcription factor IIE subunit 2

8.5e-04

27.27

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Query:  IEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLT
        ++ LK + Q++ +   +S  DI +PND R+++ +  +L   ++ I+LP +  D+EK+++  G+    +  +   +A+   S+K K ++KK    + TK+T
Subjt:  IEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLT

Query:  NAHLPELFKN
        N H+     N
Subjt:  NAHLPELFKN

Arabidopsis top hits

e value

%identity

Alignment

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit

3.1e-33

67.24

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Query:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEIS
        + + ++ L ASG ++LLSN  SQEDIAYPND + +IKVDD+ K  FR+I +P DMLDVEK+L K G+KPATNTA+RRA AQ H  S+KPK  KKKKQEIS
Subjt:  IYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEIS

Query:  KRTKLTNAHLPELFKN
        KRTKLTNAHLPELF+N
Subjt:  KRTKLTNAHLPELFKN

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit

8.4e-23

53.85

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Query:  IYKTIEGLKASGQV-WLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEI
        + + ++ LK+SG++ WLLSN DS+E   Y N+     K+DD+LK  FR+I +P DML+VEK+L K G+KPATN A+RRA  Q H  S+KPK  KKKK+EI
Subjt:  IYKTIEGLKASGQV-WLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEI

Query:  SKRTKLTNAHLPELFKN
        + RTKLTN+H+ ELF++
Subjt:  SKRTKLTNAHLPELFKN

Sequences

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CDS sequence

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ATGTCACCCATCTACAAGACGATTGAGGGTCTAAAAGCCTCTGGCCAGGTCTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATATCCAAATGACCCAAGAAT
TCAAATCAAGGTAGACGACGATTTGAAGCAATTTTTTCGAGAGATCGAATTACCTCGTGACATGCTTGACGTCGAAAAGGATCTTCAGAAGAATGGGATGAAGCCTGCAA
CCAACACTGCAAAGAGGCGAGCCAATGCACAACACGTGGCATCCTCGAAGCCGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACAT
CTTCCCGAGCTCTTCAAAAATTAG

mRNA sequence

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Protein sequence

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MSPIYKTIEGLKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQFFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAH
LPELFKN

Spg030117 (gene) of Sponge gourd (cylindrica) v1 genome