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Spg030140 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030140
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmethyl-CpG-binding domain-containing protein 13 isoform X1
Genome locationscaffold6:8197385..8236787
RNA-Seq ExpressionSpg030140
SyntenySpg030140
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR038945 - Methyl-CpG-binding domain-containing protein 13-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140859.1 methyl-CpG-binding domain-containing protein 13 isoform X1 [Momordica charantia]5.2e-1376.79Show/hide
Query:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK
        FYI PV GNAL SIRDVH  RYLTTGKVS LAYK  NQRN+++EFQ+DDISVSA+K
Subjt:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK

XP_022140860.1 methyl-CpG-binding domain-containing protein 13 isoform X2 [Momordica charantia]5.2e-1376.79Show/hide
Query:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK
        FYI PV GNAL SIRDVH  RYLTTGKVS LAYK  NQRN+++EFQ+DDISVSA+K
Subjt:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK

XP_022140861.1 methyl-CpG-binding domain-containing protein 13 isoform X3 [Momordica charantia]1.7e-1174.55Show/hide
Query:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAV
        FYI PV GNAL SIRDVH  RYLTTGKVS LAYK  NQRN+++EFQ+DDIS  AV
Subjt:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAV

XP_022140862.1 methyl-CpG-binding domain-containing protein 13 isoform X4 [Momordica charantia]5.2e-1376.79Show/hide
Query:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK
        FYI PV GNAL SIRDVH  RYLTTGKVS LAYK  NQRN+++EFQ+DDISVSA+K
Subjt:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK

XP_022984610.1 methyl-CpG-binding domain-containing protein 13-like isoform X4 [Cucurbita maxima]1.1e-1070.69Show/hide
Query:  KFYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQ--RNNDIEFQHDDISVSAV
        KFYI+PVNGNAL S+RDVH  RYLT+GKVS LAYK  +Q   N++IEFQHDDIS S+V
Subjt:  KFYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQ--RNNDIEFQHDDISVSAV

TrEMBL top hitse value%identityAlignment
A0A6J1CGC7 methyl-CpG-binding domain-containing protein 13 isoform X22.5e-1376.79Show/hide
Query:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK
        FYI PV GNAL SIRDVH  RYLTTGKVS LAYK  NQRN+++EFQ+DDISVSA+K
Subjt:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK

A0A6J1CGY7 methyl-CpG-binding domain-containing protein 13 isoform X12.5e-1376.79Show/hide
Query:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK
        FYI PV GNAL SIRDVH  RYLTTGKVS LAYK  NQRN+++EFQ+DDISVSA+K
Subjt:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK

A0A6J1CHA9 methyl-CpG-binding domain-containing protein 13 isoform X38.1e-1274.55Show/hide
Query:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAV
        FYI PV GNAL SIRDVH  RYLTTGKVS LAYK  NQRN+++EFQ+DDIS  AV
Subjt:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAV

A0A6J1CI95 methyl-CpG-binding domain-containing protein 13 isoform X42.5e-1376.79Show/hide
Query:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK
        FYI PV GNAL SIRDVH  RYLTTGKVS LAYK  NQRN+++EFQ+DDISVSA+K
Subjt:  FYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIEFQHDDISVSAVK

A0A6J1J920 methyl-CpG-binding domain-containing protein 13-like isoform X45.3e-1170.69Show/hide
Query:  KFYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQ--RNNDIEFQHDDISVSAV
        KFYI+PVNGNAL S+RDVH  RYLT+GKVS LAYK  +Q   N++IEFQHDDIS S+V
Subjt:  KFYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQ--RNNDIEFQHDDISVSAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCGCCTTCCCTTGAAGCCTGTGAGGGGAAAAAGGCACTAAAGTGCATTGGTCAACTCTACCAGAGCCCAAAAGATCCAGAGCAATCAGATGGAAAGAATTATTT
TTCTCAATTTGTGGCGATTCCCAGCTTGATAGATAAATCATTTAGGACTCTTGATAAGGTTGACCTTCTTAGTTGGAACATACCCAAATTTTACATTCATCCTGTTAATG
GAAATGCACTTCACTCCATAAGGGATGTACATCGGAATCGGTATCTAACAACGGGAAAGGTGAGCTGGTTAGCATATAAATTAATGAACCAGAGAAACAATGATATTGAG
TTTCAACATGATGACATCTCTGTAAGTGCTGTCAAGTTTTACATTGATCCTGTTAATGGAAATGCACTTCACTCTATGAGGGATGTACATCGGAATCGGTATCTAACAAC
TGGAAAGGGGAAAAAGGCACTAAAGTGCATTGGTCTACTCTACCAGAGCCCAATGATCCAGAGCAATCAGATGGAAAGAATGATTTTTCTCAATTTGTGGCGACTCCCAG
CTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCGCCTTCCCTTGAAGCCTGTGAGGGGAAAAAGGCACTAAAGTGCATTGGTCAACTCTACCAGAGCCCAAAAGATCCAGAGCAATCAGATGGAAAGAATTATTT
TTCTCAATTTGTGGCGATTCCCAGCTTGATAGATAAATCATTTAGGACTCTTGATAAGGTTGACCTTCTTAGTTGGAACATACCCAAATTTTACATTCATCCTGTTAATG
GAAATGCACTTCACTCCATAAGGGATGTACATCGGAATCGGTATCTAACAACGGGAAAGGTGAGCTGGTTAGCATATAAATTAATGAACCAGAGAAACAATGATATTGAG
TTTCAACATGATGACATCTCTGTAAGTGCTGTCAAGTTTTACATTGATCCTGTTAATGGAAATGCACTTCACTCTATGAGGGATGTACATCGGAATCGGTATCTAACAAC
TGGAAAGGGGAAAAAGGCACTAAAGTGCATTGGTCTACTCTACCAGAGCCCAATGATCCAGAGCAATCAGATGGAAAGAATGATTTTTCTCAATTTGTGGCGACTCCCAG
CTTGA
Protein sequenceShow/hide protein sequence
MAAPSLEACEGKKALKCIGQLYQSPKDPEQSDGKNYFSQFVAIPSLIDKSFRTLDKVDLLSWNIPKFYIHPVNGNALHSIRDVHRNRYLTTGKVSWLAYKLMNQRNNDIE
FQHDDISVSAVKFYIDPVNGNALHSMRDVHRNRYLTTGKGKKALKCIGLLYQSPMIQSNQMERMIFLNLWRLPA