; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030171 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030171
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein RRP5
Genome locationscaffold6:14939900..14942932
RNA-Seq ExpressionSpg030171
SyntenySpg030171
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577394.1 Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3270Show/hide
Query:  VFDVDLRSSHLSAMAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAK
        VF V L  ++LSAMAKN+NKKKRSGA+SMDITENT  ELPQAMDVSESAVHKPASGA NL                  KLKK RPMKRSKNVR T A AK
Subjt:  VFDVDLRSSHLSAMAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAK

Query:  AISKGEQTTEKILKNQSKIIRIQSAKTLYE
        AISK EQ+ EKILKNQSK  RI SAKTLYE
Subjt:  AISKGEQTTEKILKNQSKIIRIQSAKTLYE

XP_008452291.1 PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]5.4e-2970.09Show/hide
Query:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL
        MAKNRNKKKR GA+SMD+TEN+V+ELPQAMDVS S VHKPASGA                   D KLKK RPMKRSKNVR TKA+AKAISK EQ+ EKIL
Subjt:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL

Query:  KNQSKIIRIQSAKTLYE
        KNQSK  RIQSAKTLYE
Subjt:  KNQSKIIRIQSAKTLYE

XP_022929206.1 uncharacterized protein LOC111435867 [Cucurbita moschata]3.2e-2971.79Show/hide
Query:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL
        MAKN+NKKKRSGA+SMDITENT  ELPQAMDVSESAVHKPASGA NL                  KLKK RPMKRSKNVR T A AKAISK EQ+ EKIL
Subjt:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL

Query:  KNQSKIIRIQSAKTLYE
        KNQSK  RI SAKTLYE
Subjt:  KNQSKIIRIQSAKTLYE

XP_022985277.1 uncharacterized protein LOC111483316 [Cucurbita maxima]2.3e-2770.94Show/hide
Query:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL
        MAKN+N KKRSGA+SMDITENT +ELPQAMDVSESAVHKPASGA NL                  KLKK RPMKRSKNVR T A AKAISK EQ+ EKIL
Subjt:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL

Query:  KNQSKIIRIQSAKTLYE
        KNQSK  RI SAKTLYE
Subjt:  KNQSKIIRIQSAKTLYE

XP_038903593.1 uncharacterized protein LOC120090147 [Benincasa hispida]5.8e-3173.5Show/hide
Query:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL
        MAKNRNKKKRSG +SMD+TENTV+ELPQAMDVSESAVHKP SGA NL                  KLKK RPMKRSKNVR TKAMAKAISK EQ+TEKIL
Subjt:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL

Query:  KNQSKIIRIQSAKTLYE
        KNQSK  RIQSAK LYE
Subjt:  KNQSKIIRIQSAKTLYE

TrEMBL top hitse value%identityAlignment
A0A1S3BUB2 uncharacterized protein LOC1034933622.6e-2970.09Show/hide
Query:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL
        MAKNRNKKKR GA+SMD+TEN+V+ELPQAMDVS S VHKPASGA                   D KLKK RPMKRSKNVR TKA+AKAISK EQ+ EKIL
Subjt:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL

Query:  KNQSKIIRIQSAKTLYE
        KNQSK  RIQSAKTLYE
Subjt:  KNQSKIIRIQSAKTLYE

A0A6A6MLZ5 Uncharacterized protein2.4e-2260.68Show/hide
Query:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL
        MAKNRNKKK++GA+SMDITE TV+++PQAMD SES V K ASG PN                  RK+ K RPMKRSKNVR  KA+AKAISK EQ+ EK+L
Subjt:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL

Query:  KNQSKIIRIQSAKTLYE
        KN+SK  R QSAK LY+
Subjt:  KNQSKIIRIQSAKTLYE

A0A6J1EMH0 uncharacterized protein LOC1114358671.5e-2971.79Show/hide
Query:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL
        MAKN+NKKKRSGA+SMDITENT  ELPQAMDVSESAVHKPASGA NL                  KLKK RPMKRSKNVR T A AKAISK EQ+ EKIL
Subjt:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL

Query:  KNQSKIIRIQSAKTLYE
        KNQSK  RI SAKTLYE
Subjt:  KNQSKIIRIQSAKTLYE

A0A6J1J4F8 uncharacterized protein LOC1114833161.1e-2770.94Show/hide
Query:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL
        MAKN+N KKRSGA+SMDITENT +ELPQAMDVSESAVHKPASGA NL                  KLKK RPMKRSKNVR T A AKAISK EQ+ EKIL
Subjt:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKIL

Query:  KNQSKIIRIQSAKTLYE
        KNQSK  RI SAKTLYE
Subjt:  KNQSKIIRIQSAKTLYE

A0A6P4AMY3 uncharacterized protein LOC1074303305.0e-2055.08Show/hide
Query:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVH-KPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKI
        MAKNRNKKKR+G +SMDITE  V+ELPQAMD SES  H  PA+GAP +                  K+KK +PMKRSKN R  K++ KAI   E+T EK+
Subjt:  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVH-KPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKI

Query:  LKNQSKIIRIQSAKTLYE
        LKN+SK +R QSAK LY+
Subjt:  LKNQSKIIRIQSAKTLYE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G27380.1 unknown protein2.6e-0533.33Show/hide
Query:  MAKNRNKKKRSGAMSMDITEN-TVNE-LPQAMDVSESAVHKPASGAPNLCL---------------LSVSPTTSDHYSLFDRKLK---------------
        M K RNKK R    SMD++E+ +V+E  PQ MD +E+   K AS A +L                 +       D     D KL                
Subjt:  MAKNRNKKKRSGAMSMDITEN-TVNE-LPQAMDVSESAVHKPASGAPNLCL---------------LSVSPTTSDHYSLFDRKLK---------------

Query:  -----KRRP--MKRSKNVRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE
              R P  MKR+KN R  KA+AKAI+  E+   K  K+++K +R  SAK LYE
Subjt:  -----KRRP--MKRSKNVRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCTGGAGACGAAATAGGCCAAGGGGTCAGGCCAAGGCCGAAGGGATCGGCCTTTTGGCCCGACCCCATGGTCGAGTTCCTCCGACTCCATTCGGTCCCTACTGC
CTTTGACCGCCCCGGTTCCGCCTGGTTCGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGAAGGGTTTTCGATGTCGATCTCCGCAGCTCTCATCTCT
CGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAATGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCT
GCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTCTGCCTTCTTTCTGTTTCACCCACAACTTCTGATCATTACTCTTTGTTTGATAGAAAGTTGAAAAAGAGAAGACC
AATGAAGCGGTCAAAGAACGTTAGGAATACAAAAGCCATGGCGAAGGCCATATCCAAGGGTGAGCAGACAACAGAGAAAATATTGAAAAATCAGAGCAAAATTATCAGAA
TACAATCTGCAAAAACATTGTATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCCTGGAGACGAAATAGGCCAAGGGGTCAGGCCAAGGCCGAAGGGATCGGCCTTTTGGCCCGACCCCATGGTCGAGTTCCTCCGACTCCATTCGGTCCCTACTGC
CTTTGACCGCCCCGGTTCCGCCTGGTTCGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGAAGGGTTTTCGATGTCGATCTCCGCAGCTCTCATCTCT
CGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAATGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCT
GCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTCTGCCTTCTTTCTGTTTCACCCACAACTTCTGATCATTACTCTTTGTTTGATAGAAAGTTGAAAAAGAGAAGACC
AATGAAGCGGTCAAAGAACGTTAGGAATACAAAAGCCATGGCGAAGGCCATATCCAAGGGTGAGCAGACAACAGAGAAAATATTGAAAAATCAGAGCAAAATTATCAGAA
TACAATCTGCAAAAACATTGTATGAATGA
Protein sequenceShow/hide protein sequence
MDPGDEIGQGVRPRPKGSAFWPDPMVEFLRLHSVPTAFDRPGSAWFVPKRLRIPKNPRSMRRVFDVDLRSSHLSAMAKNRNKKKRSGAMSMDITENTVNELPQAMDVSES
AVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE