; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030173 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030173
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold6:14503727..14505981
RNA-Seq ExpressionSpg030173
SyntenySpg030173
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]9.2e-1638.04Show/hide
Query:  AEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQY
        +EA +RA    +      + R+   +RTD+      D  +G     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +Y
Subjt:  AEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQY

Query:  CLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
        CLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q          G+    P  EIR
Subjt:  CLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]7.1e-1646.53Show/hide
Query:  TPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEI
        TPT++  EQ+LMEI++  LL  P ++K+ P  R K QY LFHRDHGH+T++C  LK+E+E LIR+GYLKE+    +A Q        +   D   P  EI
Subjt:  TPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEI

Query:  R
        R
Subjt:  R

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.4e-1839.88Show/hide
Query:  AEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQY
        +EA +RA    +      + R+   +RTD       D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +Y
Subjt:  AEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQY

Query:  CLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
        CLFHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q          G+    P  EIR
Subjt:  CLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]5.8e-1840Show/hide
Query:  ASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLK
        + R+   +RTD+      D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHRDH H+T++   LK
Subjt:  ASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLK

Query:  DEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
        +E+E LIR GYL+E+  + +A Q          G+ +  P  EIR
Subjt:  DEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

XP_023891919.1 uncharacterized protein LOC112003925 [Quercus suber]1.1e-1639.46Show/hide
Query:  KDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYL---------KKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTR
        +D  Q  +E  R R      R D GR RP  GD           ++F  +TP + P +QILM+I++   L  P KLK +P+ R + +YC FHRDHGH T 
Subjt:  KDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYL---------KKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTR

Query:  NCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQ
        +C  LK +IEALIR G L++F +K   D   P P    P +D   P+
Subjt:  NCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQ

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128054.5e-1638.04Show/hide
Query:  AEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQY
        +EA +RA    +      + R+   +RTD+      D  +G     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +Y
Subjt:  AEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQY

Query:  CLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
        CLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q          G+    P  EIR
Subjt:  CLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

A0A6J1DDR5 uncharacterized protein LOC1110201151.0e-1541.41Show/hide
Query:  EAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNT---NLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTR
        + E +    K +       R DY R    H R RP        +ERYTPT+IP  +IL  I  +    LL  P KL+ +P+ R+K +YCLFHRDHGHST 
Subjt:  EAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNT---NLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTR

Query:  NCIQLKDEIEALIRNGYLKEFTTKAEAD
        NC +LK +IE LI++ Y K+F  K  ++
Subjt:  NCIQLKDEIEALIRNGYLKEFTTKAEAD

A0A6J1DWY0 uncharacterized protein LOC1110252932.1e-1839.88Show/hide
Query:  AEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQY
        +EA +RA    +      + R+   +RTD       D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +Y
Subjt:  AEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQY

Query:  CLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
        CLFHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q          G+    P  EIR
Subjt:  CLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

A0A6J1DYL6 uncharacterized protein LOC1110257852.8e-1840Show/hide
Query:  ASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLK
        + R+   +RTD+      D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHRDH H+T++   LK
Subjt:  ASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLK

Query:  DEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
        +E+E LIR GYL+E+  + +A Q          G+ +  P  EIR
Subjt:  DEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

A0A6J1DZ52 uncharacterized protein LOC1110256122.9e-1539.55Show/hide
Query:  KRRSAKTAESEARAAEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPR
        K+  +  AE+ +R A+    A E      E E  R D+K+  +  G         + D   G   Q D  +KFE+YTPT++P EQ+LMEI++  LL  P 
Subjt:  KRRSAKTAESEARAAEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPR

Query:  KLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
         +K+ P+ R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++   D   P  EIR
Subjt:  KLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGGCCTCGGCCTTAGGCCGAGGCCGAGCGTTATGGTCGGCCTCGGCCTTCGCCCGCTTGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCCAATGTC
GCTAGCCGCCCCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCG
GTGTGCAGGTTTTCTCTTTTGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGATGGAGATGAGAAATCTAGACATA
AACACAGAGAATTCGGATGGTGATCGCCACCAGCGGAGGTCACGGGAAGAAGGCCGAGATCGGCCTCGGACTGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCA
TCCCGAGAGAAGCAAGCTGATCTCAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGATACTTCGTATCTTGGATAAACCTGGT
CCCAGCACTAAAACCCCTGACGAGAGGCTGGTTAGGGATCCAAGGAAGGGGAAGGAGCCAATCGAGTACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAG
ACTAGCAGCATGACCAGCAAGGTCAGGGGGCTCAAACCTACTGATCGTACGATTTTGAGGAGCCCAGAGTCGAGCACACTTAAGGGGCATGACTACACAGTTTCT
ACCCCAAGCTATGGTCATGCTAAGACAGACCTGAGAAATCTGATCGAGGAGAAGCGCAGAAGTGCCAAAACTGCCGAATCTGAGGCCAGGGCTGCCGAAGCTGAA
GCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGTAGGAAGGACAAGAAGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACTATAGC
CGAGGCCGACCAGATCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAGAGGTACACCCCTACTTCAATCCCACAGGAGCAAATTTTGATG
GAGATAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGTCAGTATTGCCTCTTTCATCGAGATCATGGACAT
TCAACCAGAAACTGCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAATTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCA
AGGCCGACCAGAGATGACCCAGGCAAAGACAAGGGTGGACCTCAACTGGAAATTCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGGCCTCGGCCTTAGGCCGAGGCCGAGCGTTATGGTCGGCCTCGGCCTTCGCCCGCTTGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCCAATGTC
GCTAGCCGCCCCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCG
GTGTGCAGGTTTTCTCTTTTGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGATGGAGATGAGAAATCTAGACATA
AACACAGAGAATTCGGATGGTGATCGCCACCAGCGGAGGTCACGGGAAGAAGGCCGAGATCGGCCTCGGACTGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCA
TCCCGAGAGAAGCAAGCTGATCTCAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGATACTTCGTATCTTGGATAAACCTGGT
CCCAGCACTAAAACCCCTGACGAGAGGCTGGTTAGGGATCCAAGGAAGGGGAAGGAGCCAATCGAGTACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAG
ACTAGCAGCATGACCAGCAAGGTCAGGGGGCTCAAACCTACTGATCGTACGATTTTGAGGAGCCCAGAGTCGAGCACACTTAAGGGGCATGACTACACAGTTTCT
ACCCCAAGCTATGGTCATGCTAAGACAGACCTGAGAAATCTGATCGAGGAGAAGCGCAGAAGTGCCAAAACTGCCGAATCTGAGGCCAGGGCTGCCGAAGCTGAA
GCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGTAGGAAGGACAAGAAGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACTATAGC
CGAGGCCGACCAGATCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAGAGGTACACCCCTACTTCAATCCCACAGGAGCAAATTTTGATG
GAGATAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGTCAGTATTGCCTCTTTCATCGAGATCATGGACAT
TCAACCAGAAACTGCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAATTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCA
AGGCCGACCAGAGATGACCCAGGCAAAGACAAGGGTGGACCTCAACTGGAAATTCGTTGA
Protein sequenceShow/hide protein sequence
MVGLGLRPRPSVMVGLGLRPLARAELGHLLSVPNVASRPGFAWFVPKRLRIPKNPRSMSSIGGGVASTTPVCRFSLLQATSSPSSTNLPLVAREGQGMEMRNLDI
NTENSDGDRHQRRSREEGRDRPRTESPRPRSPLPSSREKQADLKFAALENKVSAMDHNLSRILRILDKPGPSTKTPDERLVRDPRKGKEPIEYTAESETRSKGKK
TSSMTSKVRGLKPTDRTILRSPESSTLKGHDYTVSTPSYGHAKTDLRNLIEEKRRSAKTAESEARAAEAEARAAEAEARAAEAEASRKDKKQRTDEGGRGRPDYS
RGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWP
RPTRDDPGKDKGGPQLEIR