; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030176 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030176
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold6:14592228..14595239
RNA-Seq ExpressionSpg030176
SyntenySpg030176
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063789.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-2631.3Show/hide
Query:  WTPENDAILVQCLVHLVQIG------------------------YCSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARG
        WT   D  LV+CL+ LV+ G                          S FGWNEERKCIEAEK +FD WV+GH  A+GL N+ FP+F DL +VFG+D A  
Subjt:  WTPENDAILVQCLVHLVQIG------------------------YCSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARG

Query:  GRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTRRD
        GR  TP+++       + + +D   DD +               ++ ED  + +P  + P  GE+        A  A SSR    +R   G++       
Subjt:  GRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTRRD

Query:  EMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFPPEWKYDYCMEVLGRAP
        E                             +LL    M+  F+D+P EWKY  CM +LGR P
Subjt:  EMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFPPEWKYDYCMEVLGRAP

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-2736.2Show/hide
Query:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV
        CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  TPIE+         +  D   DD +               +
Subjt:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV

Query:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD
        + ED  + +P  ++P  GE+        A    SS+ P  KR S           +M E ++           + E+E +  K LYAELQ+IPG+ + D 
Subjt:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD

Query:  LVVAWALLSYENMMTHFMDFP
        L+V  +LL    M+  F+D+P
Subjt:  LVVAWALLSYENMMTHFMDFP

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]2.3e-3334.46Show/hide
Query:  WTPENDAILVQCLVHLVQ------------IGY--------------CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSA
        WT   D +LV+CL+ LV+            +GY              CSGFGWNE +KCIE EK +FD WV+GHP A+GL N+PFP+F DL +VFG+D A
Subjt:  WTPENDAILVQCLVHLVQ------------IGY--------------CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSA

Query:  RGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTR
         GGR  TP+E++   +   D EED                      ++ ED  + +P  ++P  GE+           A SSR    +R   G++ +  R
Subjt:  RGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTR

Query:  -------------------RDEMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP
                           + E+E +  K LYAELQ+IPG+ + D L+VA +LL    M+  F+D+P
Subjt:  -------------------RDEMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP

TYK10886.1 retrotransposon protein [Cucumis melo var. makuwa]7.2e-2735.75Show/hide
Query:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV
        CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  TP+E+         +  D   DD +               +
Subjt:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV

Query:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLS---------LGNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD
        + ED  + +P  ++P  GE+        A    SSR P  KR S           +M E ++           + E+E +  K LYAELQ+IPG+ + D 
Subjt:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLS---------LGNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD

Query:  LVVAWALLSYENMMTHFMDFP
        L+V  +LL    M+  F+++P
Subjt:  LVVAWALLSYENMMTHFMDFP

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]4.2e-2736.2Show/hide
Query:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV
        CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  TPIE+         +  D   DD +               +
Subjt:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV

Query:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD
        + ED  + +P  ++P  GE+        A    SS+ P  KR S           +M E ++           + E+E +  K LYAELQ+IPG+ + D 
Subjt:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD

Query:  LVVAWALLSYENMMTHFMDFP
        L+V  +LL    M+  F+D+P
Subjt:  LVVAWALLSYENMMTHFMDFP

TrEMBL top hitse value%identityAlignment
A0A1S3CC17 uncharacterized protein LOC1034992482.0e-2736.2Show/hide
Query:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV
        CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  TPIE+         +  D   DD +               +
Subjt:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV

Query:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD
        + ED  + +P  ++P  GE+        A    SS+ P  KR S           +M E ++           + E+E +  K LYAELQ+IPG+ + D 
Subjt:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD

Query:  LVVAWALLSYENMMTHFMDFP
        L+V  +LL    M+  F+D+P
Subjt:  LVVAWALLSYENMMTHFMDFP

A0A5A7VE44 Retrotransposon protein2.9e-2631.3Show/hide
Query:  WTPENDAILVQCLVHLVQIG------------------------YCSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARG
        WT   D  LV+CL+ LV+ G                          S FGWNEERKCIEAEK +FD WV+GH  A+GL N+ FP+F DL +VFG+D A  
Subjt:  WTPENDAILVQCLVHLVQIG------------------------YCSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARG

Query:  GRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTRRD
        GR  TP+++       + + +D   DD +               ++ ED  + +P  + P  GE+        A  A SSR    +R   G++       
Subjt:  GRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTRRD

Query:  EMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFPPEWKYDYCMEVLGRAP
        E                             +LL    M+  F+D+P EWKY  CM +LGR P
Subjt:  EMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFPPEWKYDYCMEVLGRAP

A0A5A7VGQ0 Retrotransposon protein2.0e-2736.2Show/hide
Query:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV
        CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  TPIE+         +  D   DD +               +
Subjt:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV

Query:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD
        + ED  + +P  ++P  GE+        A    SS+ P  KR S           +M E ++           + E+E +  K LYAELQ+IPG+ + D 
Subjt:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD

Query:  LVVAWALLSYENMMTHFMDFP
        L+V  +LL    M+  F+D+P
Subjt:  LVVAWALLSYENMMTHFMDFP

A0A5D3C7T4 Uncharacterized protein1.1e-3334.46Show/hide
Query:  WTPENDAILVQCLVHLVQ------------IGY--------------CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSA
        WT   D +LV+CL+ LV+            +GY              CSGFGWNE +KCIE EK +FD WV+GHP A+GL N+PFP+F DL +VFG+D A
Subjt:  WTPENDAILVQCLVHLVQ------------IGY--------------CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSA

Query:  RGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTR
         GGR  TP+E++   +   D EED                      ++ ED  + +P  ++P  GE+           A SSR    +R   G++ +  R
Subjt:  RGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTR

Query:  -------------------RDEMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP
                           + E+E +  K LYAELQ+IPG+ + D L+VA +LL    M+  F+D+P
Subjt:  -------------------RDEMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP

A0A5D3CKC1 Retrotransposon protein3.5e-2735.75Show/hide
Query:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV
        CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  TP+E+         +  D   DD +               +
Subjt:  CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSV

Query:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLS---------LGNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD
        + ED  + +P  ++P  GE+        A    SSR P  KR S           +M E ++           + E+E +  K LYAELQ+IPG+ + D 
Subjt:  DYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLS---------LGNMTEPTR-----------RDEMERNRRKELYAELQSIPGVSMGDD

Query:  LVVAWALLSYENMMTHFMDFP
        L+V  +LL    M+  F+++P
Subjt:  LVVAWALLSYENMMTHFMDFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein2.2e-1024.79Show/hide
Query:  SGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVD
        +GF W+  R  + A+ DI++ +++ HP A+  R +  P + +L  +FGK+++ G          P P     + E  + D  + ++ F   +   +   D
Subjt:  SGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVD

Query:  YEDCYVLSPPVIDPTLGEEFC
        Y  C  + PP I+ T   + C
Subjt:  YEDCYVLSPPVIDPTLGEEFC

AT5G27260.1 unknown protein4.4e-0627.08Show/hide
Query:  YCSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEIT----------PKPEPIADLEEDMNVDDSEH
        + SGFGW+   K   A  +++  +++ HP  K LR   F +F++L ++FG+  A G  A    + T          P+ E + D +     D + H
Subjt:  YCSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEIT----------PKPEPIADLEEDMNVDDSEH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAAAGGGGGAGAGAGATGGACTACAAAGTTGTAGTGAATTGTGTGTTTTGGGATGATTCTAAACCTACACCAAAGGCCTCTATTTATAGGGATTCTTGGCCTTC
AATTCGTGGTAGAATGGTGCTGAATTGGGTCTTCAAACATGGAAAATTTCAGCCAAATTTGGAAAATTTCAATTCTGGAAAACTGCCTAGCGTCGCGACGCTGTGCAGCA
AGCGTCTCGACGCTGTCCCTTCAATTTTGGAAAATATTTCTTGGATTGCCCTAGCGTCTCGACTCTATGGCTGCATCGGCGTCAACTTCGAAGAAGGAGAGACATGTTGG
ACACCGGAGAATGACGCAATCCTCGTGCAATGCCTAGTCCACTTGGTGCAAATAGGATATTGTAGTGGTTTCGGTTGGAACGAGGAGAGGAAGTGCATTGAGGCGGAGAA
GGATATCTTTGATGCGTGGGTCGAGGGACACCCACGAGCTAAGGGCCTCCGTAACCGGCCATTCCCTTGGTTTAACGATTTGGCCCTGGTGTTTGGGAAGGACAGCGCGA
GAGGGGGGAGAGCCCACACTCCAATTGAGATTACACCGAAACCGGAACCGATAGCCGATCTTGAAGAAGACATGAACGTGGATGATAGCGAGCATAGCAAGCTATTTTTT
CTATCTATTTTAGAAAAATCCACATCAGTGGACTACGAAGATTGCTACGTCCTCAGTCCACCAGTTATTGATCCCACGCTCGGAGAAGAATTTTGTGGGGCATCGATTGG
TAGAGCATGTGGAGCAAGATCGTCTAGGACACCGCATAGCAAACGATTGTCCTTGGGGAACATGACTGAGCCGACGAGGAGGGATGAGATGGAGAGAAATCGTCGGAAGG
AGTTGTATGCAGAGCTACAGTCGATACCTGGAGTGTCTATGGGCGACGACTTGGTGGTCGCATGGGCACTACTTTCTTATGAGAACATGATGACTCACTTCATGGACTTC
CCTCCGGAGTGGAAGTATGACTACTGCATGGAAGTCCTTGGTAGGGCACCCACACAACCCAAGCAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAAAGGGGGAGAGAGATGGACTACAAAGTTGTAGTGAATTGTGTGTTTTGGGATGATTCTAAACCTACACCAAAGGCCTCTATTTATAGGGATTCTTGGCCTTC
AATTCGTGGTAGAATGGTGCTGAATTGGGTCTTCAAACATGGAAAATTTCAGCCAAATTTGGAAAATTTCAATTCTGGAAAACTGCCTAGCGTCGCGACGCTGTGCAGCA
AGCGTCTCGACGCTGTCCCTTCAATTTTGGAAAATATTTCTTGGATTGCCCTAGCGTCTCGACTCTATGGCTGCATCGGCGTCAACTTCGAAGAAGGAGAGACATGTTGG
ACACCGGAGAATGACGCAATCCTCGTGCAATGCCTAGTCCACTTGGTGCAAATAGGATATTGTAGTGGTTTCGGTTGGAACGAGGAGAGGAAGTGCATTGAGGCGGAGAA
GGATATCTTTGATGCGTGGGTCGAGGGACACCCACGAGCTAAGGGCCTCCGTAACCGGCCATTCCCTTGGTTTAACGATTTGGCCCTGGTGTTTGGGAAGGACAGCGCGA
GAGGGGGGAGAGCCCACACTCCAATTGAGATTACACCGAAACCGGAACCGATAGCCGATCTTGAAGAAGACATGAACGTGGATGATAGCGAGCATAGCAAGCTATTTTTT
CTATCTATTTTAGAAAAATCCACATCAGTGGACTACGAAGATTGCTACGTCCTCAGTCCACCAGTTATTGATCCCACGCTCGGAGAAGAATTTTGTGGGGCATCGATTGG
TAGAGCATGTGGAGCAAGATCGTCTAGGACACCGCATAGCAAACGATTGTCCTTGGGGAACATGACTGAGCCGACGAGGAGGGATGAGATGGAGAGAAATCGTCGGAAGG
AGTTGTATGCAGAGCTACAGTCGATACCTGGAGTGTCTATGGGCGACGACTTGGTGGTCGCATGGGCACTACTTTCTTATGAGAACATGATGACTCACTTCATGGACTTC
CCTCCGGAGTGGAAGTATGACTACTGCATGGAAGTCCTTGGTAGGGCACCCACACAACCCAAGCAACCATGA
Protein sequenceShow/hide protein sequence
MVERGREMDYKVVVNCVFWDDSKPTPKASIYRDSWPSIRGRMVLNWVFKHGKFQPNLENFNSGKLPSVATLCSKRLDAVPSILENISWIALASRLYGCIGVNFEEGETCW
TPENDAILVQCLVHLVQIGYCSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFF
LSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTRRDEMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDF
PPEWKYDYCMEVLGRAPTQPKQP